Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
NUP88Q99567 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.9□□□□□ -1.46
NUP88Q99567 RNU4-51P-201ENST00000364206 140 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
NUP88Q99567 AL136310.1-201ENST00000404926 654 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.9□□□□□ -1.46
NUP88Q99567 HMGN2P27-201ENST00000427352 270 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 FABP7P2-201ENST00000429946 379 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 RPL12P28-201ENST00000430852 489 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.9□□□□□ -1.46
NUP88Q99567 HMGB1P45-201ENST00000435986 653 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 AL137845.2-201ENST00000444292 988 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.9□□□□□ -1.46
NUP88Q99567 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.9□□□□□ -1.46
NUP88Q99567 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.9□□□□□ -1.46
NUP88Q99567 TCEA1P1-201ENST00000449716 880 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 RN7SL443P-201ENST00000464331 290 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.9□□□□□ -1.46
NUP88Q99567 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.9□□□□□ -1.46
NUP88Q99567 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.9□□□□□ -1.46
NUP88Q99567 AC124293.1-201ENST00000530034 493 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC5.9□□□□□ -1.46
NUP88Q99567 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.9□□□□□ -1.46
NUP88Q99567 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.9□□□□□ -1.46
NUP88Q99567 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
NUP88Q99567 AC018552.1-201ENST00000562099 811 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 AC127024.5-201ENST00000580085 462 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.9□□□□□ -1.46
NUP88Q99567 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
NUP88Q99567 GAS5-AS1-201ENST00000602767 694 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC5.9□□□□□ -1.46
NUP88Q99567 AC006840.1-201ENST00000623069 542 ntBASIC5.9□□□□□ -1.46
NUP88Q99567 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.9□□□□□ -1.46
NUP88Q99567 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.9□□□□□ -1.47
NUP88Q99567 AC073136.1-201ENST00000449426 2884 ntBASIC5.9□□□□□ -1.47
NUP88Q99567 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
NUP88Q99567 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
NUP88Q99567 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
NUP88Q99567 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
NUP88Q99567 SMG1P7-201ENST00000565246 2704 ntBASIC5.9□□□□□ -1.47
NUP88Q99567 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
NUP88Q99567 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.89□□□□□ -1.47
NUP88Q99567 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.89□□□□□ -1.47
NUP88Q99567 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
NUP88Q99567 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NUP88Q99567 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NUP88Q99567 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
NUP88Q99567 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.89□□□□□ -1.47
NUP88Q99567 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
NUP88Q99567 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
NUP88Q99567 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NUP88Q99567 RN7SKP74-201ENST00000362849 309 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 RNA5SP223-201ENST00000365174 120 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC5.89□□□□□ -1.47
NUP88Q99567 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.89□□□□□ -1.47
NUP88Q99567 RPL12P9-201ENST00000412942 488 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.89□□□□□ -1.47
NUP88Q99567 AF186996.5-201ENST00000418098 904 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 MTCO2P21-201ENST00000419780 677 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AL513175.2-201ENST00000422071 443 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC5.89□□□□□ -1.47
NUP88Q99567 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.89□□□□□ -1.47
NUP88Q99567 RAC1P8-201ENST00000427086 527 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.89□□□□□ -1.47
NUP88Q99567 PRPF38AP2-201ENST00000438179 851 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.89□□□□□ -1.47
NUP88Q99567 AC009263.1-201ENST00000441193 1239 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AC112498.1-201ENST00000444401 332 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AC099063.2-201ENST00000446360 662 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 PRPF38AP1-201ENST00000451976 933 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 HMGB1P4-201ENST00000455362 567 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC5.89□□□□□ -1.47
NUP88Q99567 RPS24P16-201ENST00000497294 392 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 MYL12BP2-201ENST00000503948 512 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.89□□□□□ -1.47
NUP88Q99567 BOLA3P3-201ENST00000505182 232 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC5.89□□□□□ -1.47
NUP88Q99567 AL671862.1-201ENST00000515851 349 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 RNA5SP228-201ENST00000516232 133 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC5.89□□□□□ -1.47
NUP88Q99567 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.89□□□□□ -1.47
NUP88Q99567 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.89□□□□□ -1.47
NUP88Q99567 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC5.89□□□□□ -1.47
NUP88Q99567 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC5.89□□□□□ -1.47
NUP88Q99567 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.89□□□□□ -1.47
NUP88Q99567 MTND4P33-201ENST00000556706 766 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 NIFKP8-201ENST00000560500 874 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.89□□□□□ -1.47
NUP88Q99567 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.89□□□□□ -1.47
NUP88Q99567 AC005084.1-201ENST00000605160 304 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AC023813.4-201ENST00000607580 580 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 MIR6820-201ENST00000611508 62 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
NUP88Q99567 AC139769.3-201ENST00000618383 175 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AL121895.2-201ENST00000619558 447 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AP000484.1-201ENST00000620067 1252 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.89□□□□□ -1.47
NUP88Q99567 AC138393.1-206ENST00000540997 1886 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 MTCO1P6-201ENST00000481192 1384 ntBASIC5.89□□□□□ -1.47
NUP88Q99567 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms