Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AC037471.2-201ENST00000564941 598 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AC079587.1-201ENST00000603846 277 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AL451086.1-201ENST00000605596 223 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 TCP1P3-201ENST00000414406 1498 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 RPL7P4-203ENST00000430239 730 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 RPS27AP15-201ENST00000447672 466 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 RPS26P28-201ENST00000470806 348 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AC093014.1-201ENST00000548926 724 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 MIR7151-201ENST00000617477 60 ntBASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC88AQ3V6T2 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 AC016588.2-201ENST00000632484 3021 ntBASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 RPL35AP15-201ENST00000468042 339 ntBASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 ATP1B1P1-201ENST00000509767 915 ntBASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 AL159169.3-201ENST00000608871 561 ntBASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 AL672167.1-203ENST00000641299 2975 ntBASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC88AQ3V6T2 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 AL078604.1-201ENST00000404609 466 ntBASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 AC096664.2-201ENST00000411843 406 ntBASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 SERPINA7P1-201ENST00000443077 631 ntBASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 AC007967.1-201ENST00000455422 1159 ntBASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 GAPDHP36-201ENST00000480688 918 ntBASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 AC119751.5-201ENST00000514077 770 ntBASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 SOD1P3-201ENST00000518682 454 ntBASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 YPEL5P3-201ENST00000547227 352 ntBASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 AL157762.1-201ENST00000619612 415 ntBASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC88AQ3V6T2 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 RNA5SP22-201ENST00000365393 109 ntBASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 RNU6-213P-201ENST00000384051 104 ntBASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 CEACAMP1-201ENST00000434624 1035 ntBASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 NANOGP10-201ENST00000453325 895 ntBASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 AL445433.1-201ENST00000457507 257 ntBASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 AL592156.1-201ENST00000508758 304 ntBASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 CYCSP28-201ENST00000534284 321 ntBASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 AL160290.3-201ENST00000604869 165 ntBASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC88AQ3V6T2 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 RN7SKP97-201ENST00000410966 333 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 VDAC1P9-201ENST00000412766 841 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 MTCO1P54-201ENST00000430139 712 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 PRELID3BP10-201ENST00000431957 584 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 PPIAP13-201ENST00000434706 478 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 RPS11P1-201ENST00000451072 473 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 RPL7P22-201ENST00000466005 733 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 AC026782.2-201ENST00000510845 636 ntBASIC5.14□□□□□ -1.59
CCDC88AQ3V6T2 RN7SKP46-201ENST00000515942 234 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms