Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPSAP75-201ENST00000605848 301 ntBASIC5.86□□□□□ -1.47
RNF4P78317 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.86□□□□□ -1.47
RNF4P78317 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.86□□□□□ -1.47
RNF4P78317 uc_338.31-201ENST00000615595 186 ntBASIC5.86□□□□□ -1.47
RNF4P78317 U1.31-201ENST00000620022 160 ntBASIC5.86□□□□□ -1.47
RNF4P78317 MIR7159-201ENST00000620587 66 ntBASIC5.86□□□□□ -1.47
RNF4P78317 MIR6806-201ENST00000622141 64 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AC116563.2-201ENST00000624751 535 ntBASIC5.86□□□□□ -1.47
RNF4P78317 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC5.86□□□□□ -1.47
RNF4P78317 AC003973.3-201ENST00000624863 2822 ntBASIC5.86□□□□□ -1.47
RNF4P78317 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
RNF4P78317 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 AC021242.1-201ENST00000507315 2035 ntBASIC5.86□□□□□ -1.47
RNF4P78317 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
RNF4P78317 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
RNF4P78317 AC097063.1-201ENST00000426714 1797 ntBASIC5.85□□□□□ -1.47
RNF4P78317 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
RNF4P78317 AC092326.2-201ENST00000624772 1561 ntBASIC5.85□□□□□ -1.47
RNF4P78317 ANKRD20A10P-201ENST00000457591 1515 ntBASIC5.85□□□□□ -1.47
RNF4P78317 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
RNF4P78317 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
RNF4P78317 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
RNF4P78317 RARSP1-201ENST00000542842 1418 ntBASIC5.85□□□□□ -1.47
RNF4P78317 OR4G11P-202ENST00000642116 1414 ntBASIC5.85□□□□□ -1.47
RNF4P78317 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
RNF4P78317 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
RNF4P78317 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
RNF4P78317 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
RNF4P78317 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.85□□□□□ -1.47
RNF4P78317 RNY4P34-201ENST00000364779 95 ntBASIC5.85□□□□□ -1.47
RNF4P78317 Y_RNA.295-201ENST00000364918 102 ntBASIC5.85□□□□□ -1.47
RNF4P78317 MIR506-201ENST00000384998 124 ntBASIC5.85□□□□□ -1.47
RNF4P78317 snosnR66.1-201ENST00000391095 99 ntBASIC5.85□□□□□ -1.47
RNF4P78317 SNRPEP2-201ENST00000397592 279 ntBASIC5.85□□□□□ -1.47
RNF4P78317 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.85□□□□□ -1.47
RNF4P78317 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.85□□□□□ -1.47
RNF4P78317 RNU2-28P-201ENST00000410457 189 ntBASIC5.85□□□□□ -1.47
RNF4P78317 RNU6-195P-201ENST00000411352 109 ntBASIC5.85□□□□□ -1.47
RNF4P78317 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC5.85□□□□□ -1.47
RNF4P78317 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.85□□□□□ -1.47
RNF4P78317 AL513174.1-201ENST00000423182 629 ntBASIC5.85□□□□□ -1.47
RNF4P78317 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
RNF4P78317 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.85□□□□□ -1.47
RNF4P78317 MTCO2P11-201ENST00000431069 680 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AC108479.1-201ENST00000431142 427 ntBASIC5.85□□□□□ -1.47
RNF4P78317 RPS24P8-201ENST00000431490 402 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.85□□□□□ -1.47
RNF4P78317 MTCYBP45-201ENST00000435243 565 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AL451136.1-201ENST00000435399 325 ntBASIC5.85□□□□□ -1.47
RNF4P78317 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC5.85□□□□□ -1.47
RNF4P78317 MTCO3P20-201ENST00000454926 688 ntBASIC5.85□□□□□ -1.47
RNF4P78317 UCK2-205ENST00000469256 753 ntTSL 3 BASIC5.85□□□□□ -1.47
RNF4P78317 AP000852.1-201ENST00000472460 573 ntBASIC5.85□□□□□ -1.47
RNF4P78317 RN7SL326P-201ENST00000477493 296 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AC091544.1-201ENST00000484702 348 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AC018797.1-201ENST00000510791 255 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AC025465.4-201ENST00000513422 638 ntBASIC5.85□□□□□ -1.47
RNF4P78317 RNU6-202P-201ENST00000515998 96 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.85□□□□□ -1.47
RNF4P78317 OR5BC1P-201ENST00000529327 739 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AC068587.4-201ENST00000533893 186 ntBASIC5.85□□□□□ -1.47
RNF4P78317 MAL2-203ENST00000534619 578 ntTSL 4 BASIC5.85□□□□□ -1.47
RNF4P78317 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.85□□□□□ -1.47
RNF4P78317 HMGB1P33-201ENST00000563485 527 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
RNF4P78317 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC5.85□□□□□ -1.47
RNF4P78317 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.85□□□□□ -1.47
RNF4P78317 MIR544B-201ENST00000582372 78 ntBASIC5.85□□□□□ -1.47
RNF4P78317 MIR4307-201ENST00000582802 84 ntBASIC5.85□□□□□ -1.47
RNF4P78317 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.85□□□□□ -1.47
RNF4P78317 AL117336.2-201ENST00000602435 335 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AL683813.2-201ENST00000605245 502 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC5.85□□□□□ -1.47
RNF4P78317 AC024255.1-201ENST00000614376 102 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AL591926.1-201ENST00000620542 217 ntBASIC5.85□□□□□ -1.47
RNF4P78317 AL683826.1-201ENST00000624104 627 ntBASIC5.85□□□□□ -1.47
RNF4P78317 ABBA01000935.2-201ENST00000637477 838 ntBASIC5.85□□□□□ -1.47
RNF4P78317 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
RNF4P78317 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.85□□□□□ -1.47
RNF4P78317 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
RNF4P78317 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
RNF4P78317 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.85□□□□□ -1.47
RNF4P78317 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
RNF4P78317 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.85□□□□□ -1.47
RNF4P78317 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.85□□□□□ -1.47
RNF4P78317 AC062029.1-202ENST00000606164 3651 ntBASIC5.85□□□□□ -1.47
RNF4P78317 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.85□□□□□ -1.47
RNF4P78317 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
RNF4P78317 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 DOCK11P1-201ENST00000553480 5932 ntBASIC5.84□□□□□ -1.47
RNF4P78317 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
RNF4P78317 IARS-213ENST00000627121 4587 ntTSL 5 BASIC5.84□□□□□ -1.47
RNF4P78317 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms