Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KRT19P6-201ENST00000510983 209 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 RNA5SP179-201ENST00000517284 121 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC4.15□□□□□ -1.74
COL6A3P12111 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.15□□□□□ -1.74
COL6A3P12111 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.15□□□□□ -1.74
COL6A3P12111 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.15□□□□□ -1.74
COL6A3P12111 RPL23AP97-201ENST00000568955 471 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 AC025857.2-201ENST00000602711 238 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 Z98200.1-201ENST00000607298 470 ntBASIC4.15□□□□□ -1.74
COL6A3P12111 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL6A3P12111 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.15□□□□□ -1.74
COL6A3P12111 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.15□□□□□ -1.74
COL6A3P12111 CASC19-206ENST00000641028 1430 ntBASIC4.15□□□□□ -1.75
COL6A3P12111 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A3P12111 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.15□□□□□ -1.75
COL6A3P12111 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.15□□□□□ -1.75
COL6A3P12111 RPL21P10-201ENST00000463521 490 ntBASIC4.15□□□□□ -1.75
COL6A3P12111 RPS29P19-201ENST00000479709 171 ntBASIC4.15□□□□□ -1.75
COL6A3P12111 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.15□□□□□ -1.75
COL6A3P12111 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A3P12111 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A3P12111 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
COL6A3P12111 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.15□□□□□ -1.75
COL6A3P12111 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A3P12111 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.15□□□□□ -1.75
COL6A3P12111 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A3P12111 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A3P12111 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
COL6A3P12111 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL6A3P12111 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
COL6A3P12111 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A3P12111 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.14□□□□□ -1.75
COL6A3P12111 AC010095.1-201ENST00000443543 144 ntBASIC4.14□□□□□ -1.75
COL6A3P12111 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.14□□□□□ -1.75
COL6A3P12111 RPL38P1-201ENST00000460914 211 ntBASIC4.14□□□□□ -1.75
COL6A3P12111 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.14□□□□□ -1.75
COL6A3P12111 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.14□□□□□ -1.75
COL6A3P12111 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.14□□□□□ -1.75
COL6A3P12111 AC015914.2-201ENST00000618167 288 ntBASIC4.14□□□□□ -1.75
COL6A3P12111 SCARNA15-201ENST00000607520 4325 ntBASIC4.14□□□□□ -1.75
COL6A3P12111 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
COL6A3P12111 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
COL6A3P12111 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.14□□□□□ -1.75
COL6A3P12111 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A3P12111 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A3P12111 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.14□□□□□ -1.75
COL6A3P12111 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A3P12111 AC068870.3-201ENST00000625077 2536 ntBASIC4.14□□□□□ -1.75
COL6A3P12111 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A3P12111 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
COL6A3P12111 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.14□□□□□ -1.75
COL6A3P12111 AC005868.1-201ENST00000536421 331 ntBASIC4.14□□□□□ -1.75
COL6A3P12111 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.14□□□□□ -1.75
COL6A3P12111 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.14□□□□□ -1.75
COL6A3P12111 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A3P12111 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A3P12111 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
COL6A3P12111 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
COL6A3P12111 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A3P12111 STMN1P2-201ENST00000508435 439 ntBASIC4.14□□□□□ -1.75
COL6A3P12111 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.14□□□□□ -1.75
COL6A3P12111 RN7SKP18-201ENST00000516005 275 ntBASIC4.14□□□□□ -1.75
COL6A3P12111 AC010201.1-201ENST00000605051 540 ntBASIC4.14□□□□□ -1.75
COL6A3P12111 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL6A3P12111 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A3P12111 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A3P12111 AL592182.3-201ENST00000642132 3304 ntBASIC4.13□□□□□ -1.75
COL6A3P12111 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
COL6A3P12111 FDX1P2-201ENST00000450769 375 ntBASIC4.13□□□□□ -1.75
COL6A3P12111 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.13□□□□□ -1.75
COL6A3P12111 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.13□□□□□ -1.75
COL6A3P12111 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.13□□□□□ -1.75
COL6A3P12111 MIR4276-201ENST00000584832 70 ntBASIC4.13□□□□□ -1.75
COL6A3P12111 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A3P12111 AL390838.2-201ENST00000602394 274 ntBASIC4.13□□□□□ -1.75
COL6A3P12111 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
COL6A3P12111 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.13□□□□□ -1.75
COL6A3P12111 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 AP003972.1-201ENST00000625192 5446 ntBASIC4.13□□□□□ -1.75
COL6A3P12111 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
COL6A3P12111 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A3P12111 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.13□□□□□ -1.75
COL6A3P12111 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A3P12111 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A3P12111 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.13□□□□□ -1.75
COL6A3P12111 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A3P12111 AC002069.2-201ENST00000603580 883 ntBASIC4.13□□□□□ -1.75
COL6A3P12111 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.13□□□□□ -1.75
COL6A3P12111 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.13□□□□□ -1.75
COL6A3P12111 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.13□□□□□ -1.75
COL6A3P12111 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 149.6 ms