Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS35Q96QK1 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS35Q96QK1 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS35Q96QK1 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS35Q96QK1 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS35Q96QK1 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS35Q96QK1 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS35Q96QK1 MIR320B1-201ENST00000390209 79 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 UQCRBP1-201ENST00000421129 336 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC099336.2-201ENST00000422457 254 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 Z74021.1-201ENST00000423610 407 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 IPMKP1-201ENST00000425988 855 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS35Q96QK1 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC114878.1-201ENST00000441166 358 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 PTMAP3-201ENST00000447474 330 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AL354710.1-201ENST00000453641 246 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 RPS29P33-201ENST00000456717 146 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC099560.2-201ENST00000457554 255 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 CCDC75P1-201ENST00000469247 791 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 OR52A4P-201ENST00000472867 958 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC090543.1-201ENST00000492168 485 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 RNU6-1308P-201ENST00000516817 103 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 HIGD1AP18-201ENST00000520730 278 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 AP000827.1-201ENST00000527814 258 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 OR5AN2P-201ENST00000534535 896 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC012414.2-201ENST00000559474 187 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 MIR4330-201ENST00000579077 105 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC209154.1-201ENST00000582156 337 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC069061.3-201ENST00000582254 823 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC100847.1-201ENST00000611316 481 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC104820.1-201ENST00000624183 307 ntBASIC4.53□□□□□ -1.68
VPS35Q96QK1 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS35Q96QK1 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC009313.2-201ENST00000417893 1941 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AL132640.2-201ENST00000559968 1698 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS35Q96QK1 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS35Q96QK1 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS35Q96QK1 MIR129-1-201ENST00000384972 72 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC093719.1-202ENST00000392735 373 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 NCSTNP1-201ENST00000406229 144 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 RPS20P25-201ENST00000412447 352 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC010469.1-201ENST00000463864 576 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 STMN1P2-201ENST00000508435 439 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC068714.1-201ENST00000559623 800 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC008782.1-201ENST00000603386 430 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AL133243.1-201ENST00000614487 366 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC234782.5-201ENST00000617723 324 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 AL049536.1-201ENST00000625043 744 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC092079.1-201ENST00000558620 1985 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS35Q96QK1 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 AC012020.1-201ENST00000624541 1728 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 CPHL1P-201ENST00000461341 3407 ntBASIC4.52□□□□□ -1.69
VPS35Q96QK1 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS35Q96QK1 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS35Q96QK1 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS35Q96QK1 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms