Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 RN7SKP103-201ENST00000363848 320 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 RNA5SP372-201ENST00000390836 115 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 HDGFP1-201ENST00000405943 252 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 Z86062.1-201ENST00000406773 777 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 SNORA77-201ENST00000408716 125 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 RNA5SP146-201ENST00000410743 123 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 RPL37P18-201ENST00000411602 243 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 PRELID3BP11-201ENST00000414230 479 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 EI24P4-201ENST00000423683 1078 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC008065.1-201ENST00000428525 348 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 NPM1P34-201ENST00000428821 893 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 MTND2P21-201ENST00000436242 1042 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AL353093.1-201ENST00000441292 436 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 TDGF1P1-201ENST00000445734 527 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC104971.1-201ENST00000495117 578 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 STMN1P2-201ENST00000508435 439 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC012339.2-201ENST00000523996 453 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AP001922.4-201ENST00000526967 290 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AL121594.4-201ENST00000556211 1196 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC104785.1-201ENST00000603220 588 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 LLPHP1-201ENST00000603571 367 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC087783.2-201ENST00000605070 562 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 COX6CP4-201ENST00000605798 228 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC006946.3-201ENST00000609791 756 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AL136295.6-201ENST00000610486 658 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC073342.3-201ENST00000624211 193 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AL353662.3-201ENST00000625131 237 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
ZNF540Q8NDQ6 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.46□□□□□ -1.69
ZNF540Q8NDQ6 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.69
ZNF540Q8NDQ6 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.46□□□□□ -1.69
ZNF540Q8NDQ6 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 THAP12P4-201ENST00000528321 2266 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 RNU1-94P-201ENST00000362627 173 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 SNORA70.10-201ENST00000384515 134 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 MIR1182-201ENST00000408363 97 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 RPS29P9-201ENST00000440360 171 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 TPTE2P6-202ENST00000445572 1007 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 RN7SL808P-201ENST00000496066 299 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 Y_RNA.719-201ENST00000517156 106 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC011487.3-201ENST00000593607 453 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AL049794.2-201ENST00000616301 365 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC004232.3-201ENST00000622977 525 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 AC010435.1-201ENST00000623353 1177 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 LINC01739-205ENST00000641890 573 ntBASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
ZNF540Q8NDQ6 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 U3.2-201ENST00000362981 210 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 RNA5SP443-201ENST00000363083 132 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 RNU1-20P-201ENST00000363314 162 ntBASIC4.45□□□□□ -1.7
ZNF540Q8NDQ6 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms