Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC104820.1-201ENST00000624183 307 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 BMS1P21-201ENST00000634565 365 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 DDX6P1-205ENST00000441966 1436 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 RNA5SP388-201ENST00000362584 119 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 RNU4-31P-201ENST00000384211 141 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 SNORA57.1-201ENST00000391227 145 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 ATG4AP1-201ENST00000416893 538 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AL160175.1-201ENST00000428124 247 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 KCTD10P1-201ENST00000434203 625 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 NPM1P33-201ENST00000438918 872 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AC092691.2-201ENST00000461787 803 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AC006511.1-201ENST00000470614 315 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AC073073.1-201ENST00000493920 463 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AC026402.1-201ENST00000513642 170 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AC105031.1-201ENST00000518550 476 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AC093249.4-201ENST00000564755 259 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 RN7SL652P-201ENST00000577769 300 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 MIR4716-201ENST00000579628 84 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AP005119.2-201ENST00000579735 1105 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 KPNA2P3-201ENST00000584190 848 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 BX005214.3-202ENST00000619809 325 ntBASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HDDC3Q8N4P3 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.65
HDDC3Q8N4P3 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AC104260.2-201ENST00000623551 3497 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 RN7SKP74-201ENST00000362849 309 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 SNORA62.2-201ENST00000364672 152 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 RNU6-452P-201ENST00000384406 107 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 RPL31P52-201ENST00000407532 367 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AL591848.1-201ENST00000413092 322 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 RPS26P4-201ENST00000431743 355 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 PPIAP13-201ENST00000434706 478 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AC010618.1-201ENST00000469924 477 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 MIR3160-1-201ENST00000577972 85 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AC069061.3-201ENST00000582254 823 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 BNIP3P22-201ENST00000593399 556 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 BX322635.1-201ENST00000605804 496 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AC017076.1-201ENST00000607613 578 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AC023043.4-201ENST00000612081 449 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 AL592148.3-201ENST00000608771 2646 ntBASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.77□□□□□ -1.65
HDDC3Q8N4P3 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.76□□□□□ -1.65
HDDC3Q8N4P3 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HDDC3Q8N4P3 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.76□□□□□ -1.65
HDDC3Q8N4P3 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms