Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS13DQ5THJ4 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 RPL36AP13-201ENST00000457490 317 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 TRAPPC2P2-201ENST00000517589 409 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 OR5B10P-201ENST00000532869 642 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC019176.2-201ENST00000611579 315 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AL121890.2-201ENST00000617644 465 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 SNORA3.3-201ENST00000408712 125 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 Z92545.1-201ENST00000411782 234 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC245052.5-201ENST00000416320 649 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC091516.1-201ENST00000549191 703 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC010503.3-201ENST00000594355 540 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 YPEL5P2-201ENST00000605553 359 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC005086.4-201ENST00000623065 213 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 CASC19-204ENST00000641001 2055 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AP001273.1-201ENST00000624493 3152 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 RNA5SP432-201ENST00000362480 116 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 MIR200C-201ENST00000384980 68 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 EIF4A1P1-201ENST00000420241 934 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC127024.5-201ENST00000580085 462 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 SNORA48.2-201ENST00000390926 124 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AL122016.1-201ENST00000403365 367 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AL139099.1-201ENST00000497398 403 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 RNA5SP179-201ENST00000517284 121 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC011816.2-201ENST00000607089 556 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC090246.1-201ENST00000616499 426 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 AC005858.4-201ENST00000623191 700 ntBASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 TEX41-256ENST00000626411 368 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
VPS13DQ5THJ4 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 AC017083.1-201ENST00000428093 483 ntBASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 AC007458.1-201ENST00000542812 373 ntBASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 MIR5195-201ENST00000583555 115 ntBASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 MIR432-201ENST00000606207 94 ntBASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 AL356121.2-201ENST00000624715 780 ntBASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS13DQ5THJ4 RNVU1-14-201ENST00000384770 164 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms