Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.87□□□□□ -1.47
RNF4P78317 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 MARK2P8-201ENST00000476069 952 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC5.87□□□□□ -1.47
RNF4P78317 AC010343.2-201ENST00000510162 224 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC105914.1-201ENST00000511798 226 ntBASIC5.87□□□□□ -1.47
RNF4P78317 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 RNU6-875P-201ENST00000516488 106 ntBASIC5.87□□□□□ -1.47
RNF4P78317 RNA5SP206-201ENST00000516703 121 ntBASIC5.87□□□□□ -1.47
RNF4P78317 Y_RNA.704-201ENST00000516851 102 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.87□□□□□ -1.47
RNF4P78317 IGHV1-14-201ENST00000523391 241 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AP001893.2-201ENST00000526949 202 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC109635.3-201ENST00000529536 185 ntBASIC5.87□□□□□ -1.47
RNF4P78317 HMGB1P42-201ENST00000532126 553 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC073916.1-201ENST00000545095 130 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC5.87□□□□□ -1.47
RNF4P78317 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 AL121579.2-201ENST00000555466 590 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC009120.3-201ENST00000563335 499 ntBASIC5.87□□□□□ -1.47
RNF4P78317 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 MIR3154-201ENST00000577829 84 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC090616.5-202ENST00000582111 297 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC233702.7-202ENST00000582941 211 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC112187.2-201ENST00000604345 283 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AL365503.1-201ENST00000605247 905 ntBASIC5.87□□□□□ -1.47
RNF4P78317 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 AL121757.2-201ENST00000611223 313 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC243773.3-201ENST00000613270 256 ntBASIC5.87□□□□□ -1.47
RNF4P78317 UBE2Q2P2-203ENST00000613592 761 ntBASIC5.87□□□□□ -1.47
RNF4P78317 MLECP1-201ENST00000615893 709 ntBASIC5.87□□□□□ -1.47
RNF4P78317 MIR6721-201ENST00000617181 87 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC111152.1-202ENST00000635848 339 ntBASIC5.87□□□□□ -1.47
RNF4P78317 MIR193BHG-214ENST00000641765 509 ntBASIC5.87□□□□□ -1.47
RNF4P78317 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC5.87□□□□□ -1.47
RNF4P78317 AC090017.1-201ENST00000548612 1779 ntBASIC5.87□□□□□ -1.47
RNF4P78317 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
RNF4P78317 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.86□□□□□ -1.47
RNF4P78317 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 OR4A15-201ENST00000314706 1035 ntBASIC5.86□□□□□ -1.47
RNF4P78317 RNA5SP478-201ENST00000364657 115 ntBASIC5.86□□□□□ -1.47
RNF4P78317 RNA5SP279-201ENST00000365513 117 ntBASIC5.86□□□□□ -1.47
RNF4P78317 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.86□□□□□ -1.47
RNF4P78317 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 RNU6-1011P-201ENST00000384668 107 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AL121972.1-201ENST00000402023 252 ntBASIC5.86□□□□□ -1.47
RNF4P78317 DYNLL1P7-201ENST00000429273 258 ntBASIC5.86□□□□□ -1.47
RNF4P78317 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
RNF4P78317 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.86□□□□□ -1.47
RNF4P78317 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC5.86□□□□□ -1.47
RNF4P78317 GAPDHP59-201ENST00000435908 267 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AL031663.1-201ENST00000437445 219 ntBASIC5.86□□□□□ -1.47
RNF4P78317 LSM1P1-201ENST00000438629 273 ntBASIC5.86□□□□□ -1.47
RNF4P78317 PGBD4P3-201ENST00000440731 581 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AL645936.1-201ENST00000441979 518 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
RNF4P78317 MTCO1P48-201ENST00000448024 1096 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AP000542.1-201ENST00000448473 371 ntBASIC5.86□□□□□ -1.47
RNF4P78317 GAPDHP17-201ENST00000449858 1001 ntBASIC5.86□□□□□ -1.47
RNF4P78317 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC5.86□□□□□ -1.47
RNF4P78317 AC118758.1-202ENST00000454719 225 ntBASIC5.86□□□□□ -1.47
RNF4P78317 ARL4AP2-201ENST00000507378 601 ntBASIC5.86□□□□□ -1.47
RNF4P78317 OR4D12P-201ENST00000509361 911 ntBASIC5.86□□□□□ -1.47
RNF4P78317 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.86□□□□□ -1.47
RNF4P78317 ZNF519P4-201ENST00000514008 125 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.86□□□□□ -1.47
RNF4P78317 AC008562.1-201ENST00000521763 330 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC5.86□□□□□ -1.47
RNF4P78317 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.86□□□□□ -1.47
RNF4P78317 AC024405.1-201ENST00000532521 1042 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.86□□□□□ -1.47
RNF4P78317 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.86□□□□□ -1.47
RNF4P78317 ANP32BP3-201ENST00000559213 706 ntBASIC5.86□□□□□ -1.47
RNF4P78317 ZNF322P1-201ENST00000568013 1209 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.86□□□□□ -1.47
RNF4P78317 AL391840.1-201ENST00000571144 367 ntBASIC5.86□□□□□ -1.47
RNF4P78317 OR1E3-201ENST00000575608 948 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.86□□□□□ -1.47
RNF4P78317 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.86□□□□□ -1.47
RNF4P78317 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
RNF4P78317 AC022916.3-201ENST00000592961 742 ntBASIC5.86□□□□□ -1.47
RNF4P78317 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.86□□□□□ -1.47
RNF4P78317 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC5.86□□□□□ -1.47
RNF4P78317 SMIM12P1-201ENST00000603004 274 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AL133338.2-201ENST00000604292 736 ntBASIC5.86□□□□□ -1.47
RNF4P78317 AC008277.2-201ENST00000605196 797 ntBASIC5.86□□□□□ -1.47
RNF4P78317 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms