Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SRGNP1-201ENST00000603392 451 ntBASIC6.86□□□□□ -1.31
CUX1P39880 BNIP3P19-201ENST00000605397 577 ntBASIC6.86□□□□□ -1.31
CUX1P39880 AC005086.4-201ENST00000623065 213 ntBASIC6.86□□□□□ -1.31
CUX1P39880 U6.105-201ENST00000637379 88 ntBASIC6.86□□□□□ -1.31
CUX1P39880 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC6.86□□□□□ -1.31
CUX1P39880 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CUX1P39880 AL929601.4-201ENST00000613011 1341 ntBASIC6.85□□□□□ -1.31
CUX1P39880 AL133268.1-201ENST00000405676 1401 ntBASIC6.85□□□□□ -1.31
CUX1P39880 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CUX1P39880 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
CUX1P39880 RNA5SP399-201ENST00000364003 117 ntBASIC6.85□□□□□ -1.31
CUX1P39880 MIR30B-201ENST00000384850 88 ntBASIC6.85□□□□□ -1.31
CUX1P39880 MIR7-3-201ENST00000384898 110 ntBASIC6.85□□□□□ -1.31
CUX1P39880 HMGN2P31-201ENST00000432430 273 ntBASIC6.85□□□□□ -1.31
CUX1P39880 AC104306.1-201ENST00000449702 371 ntBASIC6.85□□□□□ -1.31
CUX1P39880 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC6.85□□□□□ -1.31
CUX1P39880 AL445433.1-201ENST00000457507 257 ntBASIC6.85□□□□□ -1.31
CUX1P39880 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.85□□□□□ -1.31
CUX1P39880 RN7SL323P-201ENST00000494712 295 ntBASIC6.85□□□□□ -1.31
CUX1P39880 AC093853.1-201ENST00000515689 483 ntBASIC6.85□□□□□ -1.31
CUX1P39880 AC087369.1-201ENST00000520775 996 ntBASIC6.85□□□□□ -1.31
CUX1P39880 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC6.85□□□□□ -1.31
CUX1P39880 AC096553.1-201ENST00000605169 829 ntBASIC6.85□□□□□ -1.31
CUX1P39880 AC243756.2-201ENST00000618406 463 ntBASIC6.85□□□□□ -1.31
CUX1P39880 AC073530.2-201ENST00000623987 261 ntBASIC6.85□□□□□ -1.31
CUX1P39880 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC6.85□□□□□ -1.31
CUX1P39880 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CUX1P39880 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CUX1P39880 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC6.84□□□□□ -1.31
CUX1P39880 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
CUX1P39880 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
CUX1P39880 SNORA57.3-201ENST00000411095 141 ntBASIC6.84□□□□□ -1.31
CUX1P39880 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CUX1P39880 AC091390.3-201ENST00000426478 338 ntBASIC6.84□□□□□ -1.31
CUX1P39880 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC6.84□□□□□ -1.31
CUX1P39880 AL353748.1-201ENST00000440753 474 ntBASIC6.84□□□□□ -1.31
CUX1P39880 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC6.84□□□□□ -1.31
CUX1P39880 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC6.84□□□□□ -1.31
CUX1P39880 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC6.84□□□□□ -1.31
CUX1P39880 AC124068.1-201ENST00000563131 678 ntBASIC6.84□□□□□ -1.31
CUX1P39880 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC6.84□□□□□ -1.31
CUX1P39880 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC6.83□□□□□ -1.32
CUX1P39880 SNORA60-201ENST00000362396 134 ntBASIC6.83□□□□□ -1.32
CUX1P39880 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC6.83□□□□□ -1.32
CUX1P39880 SNORD96B-201ENST00000386148 79 ntBASIC6.83□□□□□ -1.32
CUX1P39880 PTMAP5-201ENST00000393073 333 ntBASIC6.83□□□□□ -1.32
CUX1P39880 RPL21P17-201ENST00000397467 475 ntBASIC6.83□□□□□ -1.32
CUX1P39880 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC6.83□□□□□ -1.32
CUX1P39880 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC6.83□□□□□ -1.32
CUX1P39880 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC6.83□□□□□ -1.32
CUX1P39880 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC6.83□□□□□ -1.32
CUX1P39880 AC090602.1-201ENST00000469695 252 ntBASIC6.83□□□□□ -1.32
CUX1P39880 RPS3AP6-201ENST00000484430 795 ntBASIC6.83□□□□□ -1.32
CUX1P39880 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC6.83□□□□□ -1.32
CUX1P39880 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC6.83□□□□□ -1.32
CUX1P39880 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC6.83□□□□□ -1.32
CUX1P39880 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC6.83□□□□□ -1.32
CUX1P39880 AC015726.1-201ENST00000602353 681 ntBASIC6.83□□□□□ -1.32
CUX1P39880 AL049634.3-201ENST00000604968 457 ntBASIC6.83□□□□□ -1.32
CUX1P39880 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CUX1P39880 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6.83□□□□□ -1.32
CUX1P39880 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC6.83□□□□□ -1.32
CUX1P39880 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
CUX1P39880 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
CUX1P39880 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
CUX1P39880 RN7SKP186-201ENST00000365371 303 ntBASIC6.82□□□□□ -1.32
CUX1P39880 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC6.82□□□□□ -1.32
CUX1P39880 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
CUX1P39880 AC019278.1-201ENST00000623516 479 ntBASIC6.82□□□□□ -1.32
CUX1P39880 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC6.82□□□□□ -1.32
CUX1P39880 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CUX1P39880 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CUX1P39880 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CUX1P39880 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CUX1P39880 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CUX1P39880 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
CUX1P39880 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CUX1P39880 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC6.81□□□□□ -1.32
CUX1P39880 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
CUX1P39880 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
CUX1P39880 BX119904.3-201ENST00000428194 957 ntBASIC6.81□□□□□ -1.32
CUX1P39880 FTH1P25-201ENST00000447665 469 ntBASIC6.81□□□□□ -1.32
CUX1P39880 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC6.81□□□□□ -1.32
CUX1P39880 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC6.81□□□□□ -1.32
CUX1P39880 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC6.81□□□□□ -1.32
CUX1P39880 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC6.81□□□□□ -1.32
CUX1P39880 AC019176.2-201ENST00000611579 315 ntBASIC6.81□□□□□ -1.32
CUX1P39880 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CUX1P39880 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CUX1P39880 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CUX1P39880 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC6.81□□□□□ -1.32
CUX1P39880 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC6.81□□□□□ -1.32
CUX1P39880 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CUX1P39880 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
CUX1P39880 TRIM60P17-201ENST00000415181 719 ntBASIC6.81□□□□□ -1.32
CUX1P39880 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CUX1P39880 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC6.81□□□□□ -1.32
CUX1P39880 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC6.81□□□□□ -1.32
CUX1P39880 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC6.81□□□□□ -1.32
CUX1P39880 AL391261.4-201ENST00000616012 481 ntBASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms