Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A3P25940 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
COL5A3P25940 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A3P25940 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A3P25940 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A3P25940 AC024560.2-201ENST00000507981 1497 ntBASIC5.13□□□□□ -1.59
COL5A3P25940 AL513548.1-201ENST00000562904 1724 ntBASIC5.13□□□□□ -1.59
COL5A3P25940 SNORD96B-201ENST00000386148 79 ntBASIC5.13□□□□□ -1.59
COL5A3P25940 VDAC1P9-201ENST00000412766 841 ntBASIC5.13□□□□□ -1.59
COL5A3P25940 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A3P25940 RPL23AP65-201ENST00000475608 468 ntBASIC5.13□□□□□ -1.59
COL5A3P25940 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.13□□□□□ -1.59
COL5A3P25940 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.13□□□□□ -1.59
COL5A3P25940 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.13□□□□□ -1.59
COL5A3P25940 AC015726.1-201ENST00000602353 681 ntBASIC5.13□□□□□ -1.59
COL5A3P25940 AC005086.4-201ENST00000623065 213 ntBASIC5.13□□□□□ -1.59
COL5A3P25940 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
COL5A3P25940 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
COL5A3P25940 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A3P25940 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A3P25940 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A3P25940 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A3P25940 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
COL5A3P25940 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A3P25940 AL356274.2-201ENST00000624379 3752 ntBASIC5.13□□□□□ -1.59
COL5A3P25940 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5.12□□□□□ -1.59
COL5A3P25940 AL355596.1-201ENST00000565399 3996 ntBASIC5.12□□□□□ -1.59
COL5A3P25940 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A3P25940 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.12□□□□□ -1.59
COL5A3P25940 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.12□□□□□ -1.59
COL5A3P25940 AL358178.1-201ENST00000407698 397 ntBASIC5.12□□□□□ -1.59
COL5A3P25940 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.12□□□□□ -1.59
COL5A3P25940 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.12□□□□□ -1.59
COL5A3P25940 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.12□□□□□ -1.59
COL5A3P25940 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.12□□□□□ -1.59
COL5A3P25940 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.12□□□□□ -1.59
COL5A3P25940 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.12□□□□□ -1.59
COL5A3P25940 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.12□□□□□ -1.59
COL5A3P25940 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.12□□□□□ -1.59
COL5A3P25940 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.12□□□□□ -1.59
COL5A3P25940 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.12□□□□□ -1.59
COL5A3P25940 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.12□□□□□ -1.59
COL5A3P25940 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A3P25940 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
COL5A3P25940 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A3P25940 ZNF962P-201ENST00000443465 3140 ntBASIC5.12□□□□□ -1.59
COL5A3P25940 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
COL5A3P25940 RNA5SP97-201ENST00000365006 84 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 TRIM60P17-201ENST00000415181 719 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 AC114814.2-201ENST00000419195 485 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A3P25940 AC092691.2-201ENST00000461787 803 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 NDUFA5P2-201ENST00000519723 344 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A3P25940 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A3P25940 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A3P25940 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A3P25940 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A3P25940 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A3P25940 SRGNP1-201ENST00000603392 451 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 U6.105-201ENST00000637379 88 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A3P25940 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A3P25940 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A3P25940 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A3P25940 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A3P25940 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A3P25940 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A3P25940 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
COL5A3P25940 MIR30B-201ENST00000384850 88 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A3P25940 RPS3AP12-201ENST00000443616 753 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 RPS26P28-201ENST00000470806 348 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A3P25940 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A3P25940 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A3P25940 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A3P25940 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A3P25940 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
COL5A3P25940 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.11□□□□□ -1.59
COL5A3P25940 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A3P25940 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.11□□□□□ -1.59
COL5A3P25940 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.1□□□□□ -1.59
COL5A3P25940 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.1□□□□□ -1.59
COL5A3P25940 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
COL5A3P25940 ATP5F1P4-201ENST00000397288 746 ntBASIC5.1□□□□□ -1.59
COL5A3P25940 SYF2P2-201ENST00000417620 583 ntBASIC5.1□□□□□ -1.59
COL5A3P25940 AL161631.1-201ENST00000417933 486 ntBASIC5.1□□□□□ -1.59
COL5A3P25940 RPL7P49-201ENST00000471402 708 ntBASIC5.1□□□□□ -1.59
COL5A3P25940 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 PHBP17-201ENST00000528576 541 ntBASIC5.1□□□□□ -1.59
COL5A3P25940 AP000889.1-201ENST00000530968 660 ntBASIC5.1□□□□□ -1.59
COL5A3P25940 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms