Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC093270.2-201ENST00000486157 792 ntBASIC4.22□□□□□ -1.73
SDC1P18827 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.22□□□□□ -1.73
SDC1P18827 AC105233.1-201ENST00000498840 781 ntBASIC4.22□□□□□ -1.73
SDC1P18827 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.22□□□□□ -1.73
SDC1P18827 PPBPP1-201ENST00000510807 373 ntBASIC4.22□□□□□ -1.73
SDC1P18827 AC015795.1-201ENST00000513669 327 ntBASIC4.22□□□□□ -1.73
SDC1P18827 RNU6-1308P-201ENST00000516817 103 ntBASIC4.22□□□□□ -1.73
SDC1P18827 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC1P18827 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC1P18827 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC1P18827 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 NOP56P3-201ENST00000549457 385 ntBASIC4.22□□□□□ -1.73
SDC1P18827 CKS1BP1-201ENST00000555221 240 ntBASIC4.22□□□□□ -1.73
SDC1P18827 AC023158.1-201ENST00000561632 1025 ntBASIC4.22□□□□□ -1.73
SDC1P18827 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.22□□□□□ -1.73
SDC1P18827 AL162574.2-201ENST00000614618 657 ntBASIC4.22□□□□□ -1.73
SDC1P18827 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC1P18827 AL669942.2-201ENST00000620352 697 ntBASIC4.22□□□□□ -1.73
SDC1P18827 AC073592.7-201ENST00000623659 507 ntBASIC4.22□□□□□ -1.73
SDC1P18827 AC006065.6-201ENST00000625201 545 ntBASIC4.22□□□□□ -1.73
SDC1P18827 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 AC091948.2-201ENST00000636510 279 ntBASIC4.22□□□□□ -1.73
SDC1P18827 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC1P18827 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
SDC1P18827 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.22□□□□□ -1.73
SDC1P18827 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 AC009501.3-201ENST00000605001 1352 ntBASIC4.22□□□□□ -1.73
SDC1P18827 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SDC1P18827 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SDC1P18827 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
SDC1P18827 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
SDC1P18827 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SDC1P18827 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC1P18827 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC1P18827 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.21□□□□□ -1.74
SDC1P18827 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SDC1P18827 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SDC1P18827 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SDC1P18827 RNU1-15P-201ENST00000353977 144 ntBASIC4.21□□□□□ -1.74
SDC1P18827 SNORD51.1-201ENST00000365405 77 ntBASIC4.21□□□□□ -1.74
SDC1P18827 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC1P18827 SNORA70F-201ENST00000384142 135 ntBASIC4.21□□□□□ -1.74
SDC1P18827 UBE2V1P15-201ENST00000407776 448 ntBASIC4.21□□□□□ -1.74
SDC1P18827 MIR1911-201ENST00000410783 80 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AL357078.2-201ENST00000416486 427 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC1P18827 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.21□□□□□ -1.74
SDC1P18827 EIF4EP1-201ENST00000422311 642 ntBASIC4.21□□□□□ -1.74
SDC1P18827 MTND4P24-201ENST00000424002 397 ntBASIC4.21□□□□□ -1.74
SDC1P18827 DYNLL1P7-201ENST00000429273 258 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AL359265.2-201ENST00000434367 631 ntBASIC4.21□□□□□ -1.74
SDC1P18827 MTND2P2-201ENST00000434633 945 ntBASIC4.21□□□□□ -1.74
SDC1P18827 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC1P18827 GEMIN8P3-201ENST00000445417 720 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC1P18827 AC018638.3-201ENST00000461273 132 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AC092691.2-201ENST00000461787 803 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AC079804.1-201ENST00000461922 436 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AC010326.1-201ENST00000462726 602 ntBASIC4.21□□□□□ -1.74
SDC1P18827 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC1P18827 AC083982.1-201ENST00000485679 344 ntBASIC4.21□□□□□ -1.74
SDC1P18827 NDUFA5P12-201ENST00000503796 343 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC1P18827 COL6A4P2-205ENST00000509855 506 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.21□□□□□ -1.74
SDC1P18827 NPM1P35-201ENST00000533043 868 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AC016180.1-201ENST00000567945 403 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.21□□□□□ -1.74
SDC1P18827 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC1P18827 AC211433.2-201ENST00000608433 387 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AL133243.1-201ENST00000614487 366 ntBASIC4.21□□□□□ -1.74
SDC1P18827 AC025016.1-201ENST00000616746 682 ntBASIC4.21□□□□□ -1.74
SDC1P18827 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC4.21□□□□□ -1.74
SDC1P18827 CASC19-222ENST00000641321 1173 ntBASIC4.21□□□□□ -1.74
SDC1P18827 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SDC1P18827 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC1P18827 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
SDC1P18827 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SDC1P18827 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.21□□□□□ -1.74
SDC1P18827 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SDC1P18827 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
SDC1P18827 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SDC1P18827 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
SDC1P18827 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
SDC1P18827 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
SDC1P18827 AC104118.1-201ENST00000607625 1589 ntBASIC4.2□□□□□ -1.74
SDC1P18827 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SDC1P18827 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
SDC1P18827 RNU1-94P-201ENST00000362627 173 ntBASIC4.2□□□□□ -1.74
SDC1P18827 SNORD113.2-201ENST00000364166 89 ntBASIC4.2□□□□□ -1.74
SDC1P18827 GSTM3P2-201ENST00000412746 530 ntBASIC4.2□□□□□ -1.74
SDC1P18827 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.2□□□□□ -1.74
SDC1P18827 AC004690.1-201ENST00000418216 328 ntBASIC4.2□□□□□ -1.74
SDC1P18827 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.2□□□□□ -1.74
SDC1P18827 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.2□□□□□ -1.74
SDC1P18827 AL360081.1-201ENST00000428299 555 ntBASIC4.2□□□□□ -1.74
SDC1P18827 PRELID3BP10-201ENST00000431957 584 ntBASIC4.2□□□□□ -1.74
SDC1P18827 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.2□□□□□ -1.74
SDC1P18827 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms