Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXD4P09016 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXD4P09016 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HOXD4P09016 CKS1BP1-201ENST00000555221 240 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 ATP5J2P6-201ENST00000565203 266 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXD4P09016 AC022726.1-201ENST00000587475 207 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXD4P09016 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HOXD4P09016 AC098935.2-201ENST00000604222 466 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 RMST_5.1-201ENST00000618704 126 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 MIR6853-201ENST00000619642 74 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXD4P09016 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXD4P09016 AL672167.1-205ENST00000641112 3080 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXD4P09016 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
HOXD4P09016 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXD4P09016 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXD4P09016 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
HOXD4P09016 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
HOXD4P09016 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HOXD4P09016 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXD4P09016 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXD4P09016 AC125257.1-201ENST00000560400 2930 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXD4P09016 KARSP3-201ENST00000571212 1504 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AL356489.2-201ENST00000566968 3528 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXD4P09016 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.32□□□□□ -1.72
HOXD4P09016 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXD4P09016 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXD4P09016 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXD4P09016 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HOXD4P09016 RN7SKP267-201ENST00000410381 285 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXD4P09016 RPL21P108-201ENST00000413857 481 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXD4P09016 MTND2P15-201ENST00000418575 892 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXD4P09016 LINC00993-201ENST00000420453 540 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 RNF19BPX-201ENST00000426224 625 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 MTCO1P45-201ENST00000431457 267 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AL451139.1-201ENST00000434718 346 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
HOXD4P09016 AL158053.1-201ENST00000441503 453 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 GXYLT1P1-201ENST00000446657 490 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 MRPL35P2-201ENST00000448009 511 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AL691482.1-201ENST00000453255 87 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXD4P09016 RPS17P2-201ENST00000461663 408 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AC103987.1-201ENST00000473394 348 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AC090543.1-201ENST00000492168 485 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXD4P09016 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXD4P09016 AC018442.3-201ENST00000523025 183 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AC109635.6-201ENST00000525487 1113 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
HOXD4P09016 AC133555.2-201ENST00000550213 292 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXD4P09016 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXD4P09016 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXD4P09016 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXD4P09016 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXD4P09016 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXD4P09016 AC005776.1-201ENST00000603164 290 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AC026979.4-201ENST00000606555 645 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AL023881.1-201ENST00000621088 301 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 AP003499.2-201ENST00000624100 483 ntBASIC4.32□□□□□ -1.72
HOXD4P09016 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXD4P09016 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXD4P09016 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
HOXD4P09016 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXD4P09016 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXD4P09016 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.32□□□□□ -1.72
HOXD4P09016 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXD4P09016 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXD4P09016 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.31□□□□□ -1.72
HOXD4P09016 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXD4P09016 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXD4P09016 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXD4P09016 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXD4P09016 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXD4P09016 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXD4P09016 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXD4P09016 SNORD96B-201ENST00000386148 79 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 SNORD65-201ENST00000391079 73 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AL356057.1-202ENST00000402263 756 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXD4P09016 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXD4P09016 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXD4P09016 CENPIP1-201ENST00000425713 902 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AC069285.2-201ENST00000440210 275 ntBASIC4.31□□□□□ -1.72
HOXD4P09016 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms