Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL3A1P02461 EEF1A1P37-201ENST00000522748 715 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.83□□□□□ -1.48
COL3A1P02461 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.83□□□□□ -1.48
COL3A1P02461 AC087894.1-201ENST00000538359 518 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 ZNF971P-201ENST00000562068 1249 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 SS18L2P2-201ENST00000583960 235 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 MIR3936-201ENST00000584304 110 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AC069304.3-201ENST00000603938 1084 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC5.83□□□□□ -1.48
COL3A1P02461 AL139041.1-201ENST00000605480 610 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.83□□□□□ -1.48
COL3A1P02461 DUXAP10-204ENST00000612052 616 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AL392048.1-201ENST00000613946 534 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AP000943.4-201ENST00000622912 357 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.83□□□□□ -1.48
COL3A1P02461 TMEM30CP-203ENST00000637814 1035 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.83□□□□□ -1.48
COL3A1P02461 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL3A1P02461 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL3A1P02461 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.83□□□□□ -1.48
COL3A1P02461 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL3A1P02461 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL3A1P02461 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
COL3A1P02461 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC5.83□□□□□ -1.48
COL3A1P02461 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL3A1P02461 AP000756.2-201ENST00000624168 2567 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL3A1P02461 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.83□□□□□ -1.48
COL3A1P02461 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL3A1P02461 RNA5SP479-201ENST00000364858 117 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 SNORA11F-201ENST00000408237 128 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.83□□□□□ -1.48
COL3A1P02461 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC5.83□□□□□ -1.48
COL3A1P02461 AL157831.1-201ENST00000426134 473 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 RPL34P6-201ENST00000432390 345 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 RPL7P33-201ENST00000444159 742 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC5.83□□□□□ -1.48
COL3A1P02461 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC5.83□□□□□ -1.48
COL3A1P02461 EIF2S2P4-201ENST00000461070 984 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.83□□□□□ -1.48
COL3A1P02461 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.83□□□□□ -1.48
COL3A1P02461 AC104164.2-201ENST00000496953 495 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.83□□□□□ -1.48
COL3A1P02461 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.83□□□□□ -1.48
COL3A1P02461 RNA5SP360-201ENST00000516555 118 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AC090151.1-201ENST00000520784 730 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AP003033.1-201ENST00000527244 415 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL3A1P02461 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC5.83□□□□□ -1.48
COL3A1P02461 AC084759.1-201ENST00000561168 290 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.83□□□□□ -1.48
COL3A1P02461 AC022387.2-201ENST00000604050 448 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AC005332.10-201ENST00000612725 619 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AC005156.1-201ENST00000613371 573 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.83□□□□□ -1.48
COL3A1P02461 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC5.83□□□□□ -1.48
COL3A1P02461 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 AC004656.1-201ENST00000568479 4951 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.82□□□□□ -1.48
COL3A1P02461 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL3A1P02461 SNORA63.3-201ENST00000362682 132 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC5.82□□□□□ -1.48
COL3A1P02461 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.82□□□□□ -1.48
COL3A1P02461 PEX12P1-201ENST00000400284 1048 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 RPS20P14-201ENST00000412545 360 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.82□□□□□ -1.48
COL3A1P02461 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC5.82□□□□□ -1.48
COL3A1P02461 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 RPS26P2-201ENST00000440331 348 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.82□□□□□ -1.48
COL3A1P02461 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.82□□□□□ -1.48
COL3A1P02461 HMGN1P5-201ENST00000448591 263 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.82□□□□□ -1.48
COL3A1P02461 RPL7P32-201ENST00000457119 744 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.82□□□□□ -1.48
COL3A1P02461 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.82□□□□□ -1.48
COL3A1P02461 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.82□□□□□ -1.48
COL3A1P02461 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.82□□□□□ -1.48
COL3A1P02461 UBTFL10-201ENST00000528532 562 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 OR5BC1P-201ENST00000529327 739 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.82□□□□□ -1.48
COL3A1P02461 MIR3939-201ENST00000582614 106 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.82□□□□□ -1.48
COL3A1P02461 AC008751.2-201ENST00000597885 980 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 AC091057.3-201ENST00000602684 733 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC5.82□□□□□ -1.48
COL3A1P02461 Z99289.3-201ENST00000605586 594 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 MIR6716-201ENST00000613413 80 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 AC004943.3-201ENST00000624116 600 ntBASIC5.82□□□□□ -1.48
COL3A1P02461 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL3A1P02461 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms