Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 AL353726.1-201ENST00000614041 1000 ntBASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 AL445567.2-201ENST00000618935 498 ntBASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 AL023881.1-201ENST00000621088 301 ntBASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 MIR3653-201ENST00000625572 110 ntBASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 AC090017.1-201ENST00000548612 1779 ntBASIC4.34□□□□□ -1.71
TMX2-CTNND1H3BSU7 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.34□□□□□ -1.72
TMX2-CTNND1H3BSU7 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 IQCB2P-201ENST00000401788 1633 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 RNU6-167P-201ENST00000384292 106 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 MIR93-201ENST00000385024 80 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 ST13P16-201ENST00000401760 781 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AL445189.1-201ENST00000405722 338 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 RPL23AP26-201ENST00000412728 464 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 RANP7-201ENST00000418085 644 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC244033.1-201ENST00000426826 870 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC069285.2-201ENST00000440210 275 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 RPL7P19-201ENST00000469948 618 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC105137.1-201ENST00000484355 562 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 PPM1AP1-201ENST00000502740 1135 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC091917.2-201ENST00000505002 744 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 RNA5SP154-201ENST00000516193 111 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AP003730.1-201ENST00000524605 285 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AP005901.4-201ENST00000577336 569 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 ZYXP1-201ENST00000617638 118 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 uc_338.13-201ENST00000618243 179 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC034229.5-201ENST00000624258 185 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TMX2-CTNND1H3BSU7 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC005261.4-201ENST00000600047 1385 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 MIR448-201ENST00000362131 111 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 ATP5F1P2-201ENST00000398143 760 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 RAD23BP1-201ENST00000421404 1227 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AP001324.1-201ENST00000428553 399 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 KCTD10P1-201ENST00000434203 625 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AL935212.3-201ENST00000450729 284 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC020898.1-201ENST00000474167 787 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 TRAV11-201ENST00000539512 339 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC084824.1-201ENST00000550917 1005 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AL121834.1-201ENST00000572284 509 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 AL391684.1-202ENST00000641293 1636 ntBASIC4.32□□□□□ -1.72
TMX2-CTNND1H3BSU7 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 RHOT1P2-201ENST00000366423 333 ntBASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 SNORA11F-201ENST00000408237 128 ntBASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 RPL7P57-201ENST00000423238 740 ntBASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TMX2-CTNND1H3BSU7 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms