Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13CQ709C8 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13CQ709C8 AC009078.2-202ENST00000463353 338 ntBASIC16.24■□□□□ 0.19
VPS13CQ709C8 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS13CQ709C8 AC141257.4-201ENST00000634557 245 ntBASIC16.24■□□□□ 0.19
VPS13CQ709C8 AC136944.6-201ENST00000634818 245 ntBASIC16.24■□□□□ 0.19
VPS13CQ709C8 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13CQ709C8 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13CQ709C8 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13CQ709C8 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
VPS13CQ709C8 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VPS13CQ709C8 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS13CQ709C8 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.23■□□□□ 0.19
VPS13CQ709C8 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.23■□□□□ 0.19
VPS13CQ709C8 FEM1AP1-201ENST00000431297 1995 ntBASIC16.23■□□□□ 0.19
VPS13CQ709C8 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.23■□□□□ 0.19
VPS13CQ709C8 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
VPS13CQ709C8 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS13CQ709C8 PCDHAC2-203ENST00000615316 3011 ntBASIC16.23■□□□□ 0.19
VPS13CQ709C8 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.23■□□□□ 0.19
VPS13CQ709C8 ATP5G2P1-201ENST00000433580 426 ntBASIC16.23■□□□□ 0.19
VPS13CQ709C8 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13CQ709C8 CKBP1-201ENST00000565489 1086 ntBASIC16.23■□□□□ 0.19
VPS13CQ709C8 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 AC007225.1-201ENST00000566331 1836 ntBASIC16.22■□□□□ 0.19
VPS13CQ709C8 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 HOMER2P1-201ENST00000455653 964 ntBASIC16.22■□□□□ 0.19
VPS13CQ709C8 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13CQ709C8 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13CQ709C8 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
VPS13CQ709C8 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13CQ709C8 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13CQ709C8 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.21■□□□□ 0.19
VPS13CQ709C8 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS13CQ709C8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13CQ709C8 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13CQ709C8 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13CQ709C8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.21■□□□□ 0.19
VPS13CQ709C8 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13CQ709C8 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13CQ709C8 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.21■□□□□ 0.19
VPS13CQ709C8 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS13CQ709C8 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
VPS13CQ709C8 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VPS13CQ709C8 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VPS13CQ709C8 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VPS13CQ709C8 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VPS13CQ709C8 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.21■□□□□ 0.18
VPS13CQ709C8 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.21■□□□□ 0.18
VPS13CQ709C8 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.18
VPS13CQ709C8 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13CQ709C8 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms