Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MIR223-201ENST00000385204 110 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 RAP1BP1-201ENST00000412709 553 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC079809.1-201ENST00000415468 276 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 TRGV6-201ENST00000417928 299 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AL390023.1-201ENST00000428836 262 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 RPL19P16-201ENST00000433839 588 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 GAPDHP25-201ENST00000447061 1001 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 BX248409.1-201ENST00000455497 255 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 TRBV8-2-201ENST00000475637 270 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC058823.1-201ENST00000485315 474 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC084024.2-201ENST00000503480 791 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC092709.1-201ENST00000521355 1045 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AL359219.2-201ENST00000555184 348 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC044860.2-201ENST00000561005 179 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC122134.1-201ENST00000565664 1104 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 RN7SL290P-201ENST00000578661 300 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC022884.3-201ENST00000579571 248 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AL158042.1-201ENST00000605338 460 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 VIS1.1-201ENST00000610517 203 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC107075.1-201ENST00000613695 314 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AL392048.1-201ENST00000613946 534 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AP003497.2-201ENST00000624220 967 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AC103706.2-201ENST00000638080 240 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 MTND4P31-201ENST00000425607 1343 ntBASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.2□□□□□ -1.58
PTCHD3Q3KNS1 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 TTC39DP-201ENST00000416781 1688 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 OR4K12P-201ENST00000406538 961 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 RNU4-72P-201ENST00000410754 173 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 MORF4L1P6-201ENST00000418771 268 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 SLC35E1P1-201ENST00000419313 864 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 MTND4P20-201ENST00000424125 869 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL139148.1-201ENST00000427122 680 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC124944.2-201ENST00000429866 1242 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC022022.1-201ENST00000430304 178 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 MTND1P32-201ENST00000433043 938 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 HMGB1P45-201ENST00000435986 653 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC073143.1-201ENST00000436316 395 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 CNOT7P2-201ENST00000441051 832 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 FGF7P5-201ENST00000441829 291 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 FAR2P1-206ENST00000449736 709 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL133477.1-201ENST00000457472 514 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC005532.2-201ENST00000467154 373 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 GAPDHP39-201ENST00000481866 979 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 RN7SL727P-201ENST00000482164 296 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC072052.1-201ENST00000496556 306 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC010198.2-201ENST00000550612 259 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AC121247.2-201ENST00000604776 136 ntBASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.19□□□□□ -1.58
PTCHD3Q3KNS1 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms