Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AP001804.2-201ENST00000533932 910 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 OR5AN2P-201ENST00000534535 896 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AC063949.1-201ENST00000552900 865 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AC079171.1-201ENST00000568788 914 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 OR1AB1P-201ENST00000585564 761 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA1P55317 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.02□□□□□ -1.77
FOXA1P55317 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA1P55317 FAM27D1-201ENST00000612308 341 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.02□□□□□ -1.77
FOXA1P55317 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.02□□□□□ -1.77
FOXA1P55317 AC092162.3-201ENST00000624511 1624 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA1P55317 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA1P55317 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
FOXA1P55317 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
FOXA1P55317 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
FOXA1P55317 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA1P55317 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA1P55317 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA1P55317 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA1P55317 MTND4P26-201ENST00000415971 1359 ntBASIC4.02□□□□□ -1.77
FOXA1P55317 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.02□□□□□ -1.77
FOXA1P55317 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
FOXA1P55317 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA1P55317 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
FOXA1P55317 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
FOXA1P55317 CYB5AP4-201ENST00000396692 399 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 LAP3P1-201ENST00000403648 294 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 RNU6-233P-201ENST00000410845 141 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 PGBD4P8-201ENST00000412993 562 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.01□□□□□ -1.77
FOXA1P55317 P2RY10P2-201ENST00000416730 913 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA1P55317 RPS29P17-201ENST00000430795 166 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 FHP1-201ENST00000442741 703 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 AL451050.1-201ENST00000450126 415 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA1P55317 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA1P55317 RPL23AP24-201ENST00000458203 385 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 RPL35P6-201ENST00000490024 372 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 RPL31P61-201ENST00000496160 376 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA1P55317 AC008958.1-201ENST00000511047 682 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.01□□□□□ -1.77
FOXA1P55317 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA1P55317 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA1P55317 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.01□□□□□ -1.77
FOXA1P55317 AC022655.2-201ENST00000577280 318 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA1P55317 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.01□□□□□ -1.77
FOXA1P55317 AC073342.3-201ENST00000624211 193 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 AL773545.4-201ENST00000637262 310 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 AL139254.3-201ENST00000641097 674 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 AL513478.4-201ENST00000641636 310 ntBASIC4.01□□□□□ -1.77
FOXA1P55317 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.01□□□□□ -1.77
FOXA1P55317 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA1P55317 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
FOXA1P55317 VPS35P1-201ENST00000563400 1518 ntBASIC4□□□□□ -1.77
FOXA1P55317 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
FOXA1P55317 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
FOXA1P55317 ERCC6-202ENST00000374127 1782 ntBASIC4□□□□□ -1.77
FOXA1P55317 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4□□□□□ -1.77
FOXA1P55317 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4□□□□□ -1.77
FOXA1P55317 RNA5SP447-201ENST00000363749 119 ntBASIC4□□□□□ -1.77
FOXA1P55317 RNU1-132P-201ENST00000364300 164 ntBASIC4□□□□□ -1.77
FOXA1P55317 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4□□□□□ -1.77
FOXA1P55317 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
FOXA1P55317 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4□□□□□ -1.77
FOXA1P55317 RPA2P2-201ENST00000419698 796 ntBASIC4□□□□□ -1.77
FOXA1P55317 RPL12P28-201ENST00000430852 489 ntBASIC4□□□□□ -1.77
FOXA1P55317 AC011742.1-201ENST00000431448 434 ntBASIC4□□□□□ -1.77
FOXA1P55317 AC013410.1-201ENST00000436223 1232 ntBASIC4□□□□□ -1.77
FOXA1P55317 TPTE2P3-201ENST00000441562 1189 ntBASIC4□□□□□ -1.77
FOXA1P55317 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4□□□□□ -1.77
FOXA1P55317 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4□□□□□ -1.77
FOXA1P55317 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4□□□□□ -1.77
FOXA1P55317 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4□□□□□ -1.77
FOXA1P55317 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4□□□□□ -1.77
FOXA1P55317 MTND1P6-201ENST00000523621 946 ntBASIC4□□□□□ -1.77
FOXA1P55317 AC137768.1-201ENST00000549998 553 ntBASIC4□□□□□ -1.77
FOXA1P55317 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4□□□□□ -1.77
FOXA1P55317 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4□□□□□ -1.77
FOXA1P55317 RPL23AP87-202ENST00000573039 466 ntBASIC4□□□□□ -1.77
FOXA1P55317 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4□□□□□ -1.77
FOXA1P55317 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4□□□□□ -1.77
FOXA1P55317 AC074276.2-201ENST00000619891 348 ntBASIC4□□□□□ -1.77
FOXA1P55317 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4□□□□□ -1.77
FOXA1P55317 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4□□□□□ -1.77
FOXA1P55317 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
FOXA1P55317 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA1P55317 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA1P55317 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA1P55317 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
FOXA1P55317 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA1P55317 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA1P55317 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC3.99□□□□□ -1.77
FOXA1P55317 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA1P55317 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms