Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.54□□□□□ -1.68
COL4A4P53420 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A4P53420 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A4P53420 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A4P53420 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
COL4A4P53420 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A4P53420 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A4P53420 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A4P53420 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 SNORA5A-201ENST00000384111 134 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 MIR7-3-201ENST00000384898 110 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 MIR195-201ENST00000385194 87 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A4P53420 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A4P53420 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.54□□□□□ -1.68
COL4A4P53420 AC104978.1-201ENST00000449387 391 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A4P53420 AC008481.1-201ENST00000463278 396 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A4P53420 KCTD9P2-201ENST00000512203 1013 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 AC100770.1-201ENST00000532310 322 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.54□□□□□ -1.68
COL4A4P53420 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.54□□□□□ -1.68
COL4A4P53420 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.54□□□□□ -1.68
COL4A4P53420 AC019176.2-201ENST00000611579 315 ntBASIC4.54□□□□□ -1.68
COL4A4P53420 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.54□□□□□ -1.68
COL4A4P53420 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.54□□□□□ -1.68
COL4A4P53420 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
COL4A4P53420 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL4A4P53420 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
COL4A4P53420 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC4.53□□□□□ -1.68
COL4A4P53420 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.53□□□□□ -1.68
COL4A4P53420 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.53□□□□□ -1.68
COL4A4P53420 U8.11-201ENST00000384699 133 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 U8.12-201ENST00000384701 133 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 RNU4-6P-201ENST00000410804 122 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A4P53420 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.53□□□□□ -1.68
COL4A4P53420 OR5BE1P-201ENST00000425977 939 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 HMGN2P31-201ENST00000432430 273 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 ARL4AP3-201ENST00000441452 574 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 U8.18-201ENST00000459285 133 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.53□□□□□ -1.68
COL4A4P53420 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A4P53420 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 AC008759.1-201ENST00000589783 983 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 SNORA51-201ENST00000606420 132 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 AC091905.2-201ENST00000623143 306 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 AC007342.8-201ENST00000623278 678 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC4.53□□□□□ -1.68
COL4A4P53420 OR5BE1P-202ENST00000641168 1176 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL4A4P53420 AL929601.4-201ENST00000613011 1341 ntBASIC4.53□□□□□ -1.68
COL4A4P53420 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL4A4P53420 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.53□□□□□ -1.68
COL4A4P53420 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC4.53□□□□□ -1.69
COL4A4P53420 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A4P53420 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A4P53420 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A4P53420 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.52□□□□□ -1.69
COL4A4P53420 SNORA73.2-201ENST00000364946 201 ntBASIC4.52□□□□□ -1.69
COL4A4P53420 RN7SKP182-201ENST00000410772 298 ntBASIC4.52□□□□□ -1.69
COL4A4P53420 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A4P53420 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.52□□□□□ -1.69
COL4A4P53420 VN1R32P-201ENST00000452234 905 ntBASIC4.52□□□□□ -1.69
COL4A4P53420 AC119751.5-201ENST00000514077 770 ntBASIC4.52□□□□□ -1.69
COL4A4P53420 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.52□□□□□ -1.69
COL4A4P53420 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.52□□□□□ -1.69
COL4A4P53420 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.52□□□□□ -1.69
COL4A4P53420 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.52□□□□□ -1.69
COL4A4P53420 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC4.52□□□□□ -1.69
COL4A4P53420 TCP1P3-201ENST00000414406 1498 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms