Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
LIG3P49916 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
LIG3P49916 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.41□□□□□ -1.38
LIG3P49916 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.41□□□□□ -1.38
LIG3P49916 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIG3P49916 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
LIG3P49916 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
LIG3P49916 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIG3P49916 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.41□□□□□ -1.38
LIG3P49916 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC6.41□□□□□ -1.38
LIG3P49916 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIG3P49916 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
LIG3P49916 BIN2P1-201ENST00000504996 1530 ntBASIC6.4□□□□□ -1.38
LIG3P49916 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LIG3P49916 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.38
LIG3P49916 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LIG3P49916 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LIG3P49916 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
LIG3P49916 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
LIG3P49916 Y_RNA.554-201ENST00000384672 102 ntBASIC6.4□□□□□ -1.38
LIG3P49916 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 AC025750.1-201ENST00000399891 379 ntBASIC6.4□□□□□ -1.38
LIG3P49916 MTND4LP20-201ENST00000402379 270 ntBASIC6.4□□□□□ -1.38
LIG3P49916 MIR1275-201ENST00000408770 80 ntBASIC6.4□□□□□ -1.38
LIG3P49916 RNA5SP198-201ENST00000410376 127 ntBASIC6.4□□□□□ -1.38
LIG3P49916 CCDC58P2-201ENST00000417131 366 ntBASIC6.4□□□□□ -1.38
LIG3P49916 AL953862.1-201ENST00000423016 168 ntBASIC6.4□□□□□ -1.38
LIG3P49916 AC099782.1-201ENST00000425889 474 ntBASIC6.4□□□□□ -1.38
LIG3P49916 NIPA2P1-201ENST00000426223 976 ntBASIC6.4□□□□□ -1.38
LIG3P49916 RPL7P56-201ENST00000429441 717 ntBASIC6.4□□□□□ -1.38
LIG3P49916 FGF12-202ENST00000430714 603 ntTSL 2 BASIC6.4□□□□□ -1.38
LIG3P49916 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG3P49916 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 GAPDHP59-201ENST00000435908 267 ntBASIC6.4□□□□□ -1.38
LIG3P49916 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG3P49916 AC244505.5-201ENST00000443639 207 ntBASIC6.4□□□□□ -1.38
LIG3P49916 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.4□□□□□ -1.38
LIG3P49916 AL671855.1-201ENST00000446875 1203 ntBASIC6.4□□□□□ -1.38
LIG3P49916 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC6.4□□□□□ -1.38
LIG3P49916 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 SLC31A1P1-201ENST00000451221 567 ntBASIC6.4□□□□□ -1.38
LIG3P49916 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.4□□□□□ -1.38
LIG3P49916 AC118758.1-202ENST00000454719 225 ntBASIC6.4□□□□□ -1.38
LIG3P49916 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 AC104339.1-201ENST00000465478 348 ntBASIC6.4□□□□□ -1.38
LIG3P49916 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.4□□□□□ -1.38
LIG3P49916 AC099521.1-201ENST00000482557 334 ntBASIC6.4□□□□□ -1.38
LIG3P49916 RN7SL362P-201ENST00000494228 267 ntBASIC6.4□□□□□ -1.38
LIG3P49916 PDLIM1P4-201ENST00000504327 1006 ntBASIC6.4□□□□□ -1.38
LIG3P49916 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
LIG3P49916 RNA5SP441-201ENST00000516809 88 ntBASIC6.4□□□□□ -1.38
LIG3P49916 IGKV2-36-201ENST00000519999 223 ntBASIC6.4□□□□□ -1.38
LIG3P49916 OR6M2P-201ENST00000529831 871 ntBASIC6.4□□□□□ -1.38
LIG3P49916 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG3P49916 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC6.4□□□□□ -1.38
LIG3P49916 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC6.4□□□□□ -1.38
LIG3P49916 AC006960.3-201ENST00000561845 705 ntBASIC6.4□□□□□ -1.38
LIG3P49916 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LIG3P49916 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.4□□□□□ -1.38
LIG3P49916 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC6.4□□□□□ -1.38
LIG3P49916 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.4□□□□□ -1.38
LIG3P49916 AL365181.4-201ENST00000609800 547 ntBASIC6.4□□□□□ -1.38
LIG3P49916 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.4□□□□□ -1.38
LIG3P49916 AC007014.2-201ENST00000615581 479 ntBASIC6.4□□□□□ -1.38
LIG3P49916 AC027807.2-201ENST00000616099 408 ntBASIC6.4□□□□□ -1.38
LIG3P49916 MIR6721-201ENST00000617181 87 ntBASIC6.4□□□□□ -1.38
LIG3P49916 uc_338.9-201ENST00000617424 182 ntBASIC6.4□□□□□ -1.38
LIG3P49916 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
LIG3P49916 ZNF37BP-203ENST00000452306 1352 ntBASIC6.4□□□□□ -1.39
LIG3P49916 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.4□□□□□ -1.39
LIG3P49916 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
LIG3P49916 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
LIG3P49916 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC6.39□□□□□ -1.39
LIG3P49916 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.39□□□□□ -1.39
LIG3P49916 RNU6-115P-201ENST00000364310 107 ntBASIC6.39□□□□□ -1.39
LIG3P49916 RNU5E-5P-201ENST00000365379 116 ntBASIC6.39□□□□□ -1.39
LIG3P49916 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC6.39□□□□□ -1.39
LIG3P49916 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIG3P49916 RNU6-225P-201ENST00000384613 103 ntBASIC6.39□□□□□ -1.39
LIG3P49916 MIR188-201ENST00000385034 86 ntBASIC6.39□□□□□ -1.39
LIG3P49916 SNORA40.3-201ENST00000390964 122 ntBASIC6.39□□□□□ -1.39
LIG3P49916 PEX12P1-201ENST00000400284 1048 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AL096800.1-201ENST00000405326 893 ntBASIC6.39□□□□□ -1.39
LIG3P49916 FCF1P2-201ENST00000415284 583 ntBASIC6.39□□□□□ -1.39
LIG3P49916 AC083875.1-201ENST00000419509 405 ntBASIC6.39□□□□□ -1.39
LIG3P49916 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.39□□□□□ -1.39
LIG3P49916 ZNF863P-201ENST00000426746 417 ntBASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms