Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RPL23AP59-201ENST00000399415 461 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 RPL22P18-201ENST00000417197 377 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 RPL24P2-201ENST00000421023 475 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 AL133173.1-201ENST00000423458 397 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AC010099.3-201ENST00000423896 409 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 AC124944.2-201ENST00000429866 1242 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 HMGB3P10-201ENST00000434734 572 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 FTH1P16-201ENST00000435241 552 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 RPL35AP21-201ENST00000437667 333 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AC092170.1-201ENST00000440211 356 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AC005297.1-201ENST00000444765 862 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AL050341.1-201ENST00000447743 313 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AP006222.1-205ENST00000450734 457 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 HLA-DPA3-207ENST00000454398 229 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 USP9YP25-201ENST00000457708 443 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 AC108751.2-201ENST00000469993 231 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 RPL23AP2-201ENST00000471227 466 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA1P49639 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXA1P49639 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA1P49639 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXA1P49639 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 MTATP6P15-201ENST00000527233 835 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA1P49639 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
HOXA1P49639 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 NPM1P47-201ENST00000560843 856 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXA1P49639 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 AC122134.1-201ENST00000565664 1104 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 AC004223.2-201ENST00000590309 544 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA1P49639 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA1P49639 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 MIR6780B-201ENST00000610307 79 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 Z99129.2-201ENST00000619967 314 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AC055839.1-201ENST00000634467 498 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 BRAFP1-201ENST00000445336 2703 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 AC017104.4-201ENST00000636283 1592 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA1P49639 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA1P49639 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA1P49639 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA1P49639 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.29□□□□□ -1.72
HOXA1P49639 NF1-214ENST00000490416 1329 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA1P49639 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.29□□□□□ -1.72
HOXA1P49639 AC139713.2-215ENST00000641428 5037 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXA1P49639 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA1P49639 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA1P49639 RNA5SP513-201ENST00000364648 118 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA1P49639 MIR621-201ENST00000384919 96 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 DBIP1-201ENST00000401435 260 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 HSPA8P15-201ENST00000401676 786 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 TCEA1P4-201ENST00000415066 844 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA1P49639 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA1P49639 AL513175.2-201ENST00000422071 443 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA1P49639 PLA2G12AP2-201ENST00000424744 264 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 RAC1P8-201ENST00000427086 527 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.29□□□□□ -1.72
HOXA1P49639 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA1P49639 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA1P49639 GSTM5P1-201ENST00000434751 660 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 GAPDHP58-201ENST00000438477 1006 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 EEF1A1P39-201ENST00000440791 250 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA1P49639 AC092685.1-201ENST00000447960 1243 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AL589880.1-201ENST00000448271 287 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AL672138.1-201ENST00000450604 1015 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 RANP1-206ENST00000455094 651 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA1P49639 RN7SL741P-201ENST00000482473 289 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 PFN1P8-201ENST00000497012 543 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC091860.1-201ENST00000505723 432 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC092593.2-201ENST00000513866 913 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC083923.1-201ENST00000523708 376 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms