Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX1P28360 CASC11-203ENST00000519071 791 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX1P28360 AC090572.1-201ENST00000519251 160 ntBASIC6.49□□□□□ -1.37
MSX1P28360 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
MSX1P28360 AP001803.1-201ENST00000525668 147 ntBASIC6.49□□□□□ -1.37
MSX1P28360 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC6.49□□□□□ -1.37
MSX1P28360 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 AL109918.3-201ENST00000603072 338 ntBASIC6.49□□□□□ -1.37
MSX1P28360 NUTF2P8-201ENST00000604593 363 ntBASIC6.49□□□□□ -1.37
MSX1P28360 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX1P28360 RNU6-89P-201ENST00000606519 100 ntBASIC6.49□□□□□ -1.37
MSX1P28360 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 AL031777.2-201ENST00000611953 196 ntBASIC6.49□□□□□ -1.37
MSX1P28360 MIR6889-201ENST00000613185 59 ntBASIC6.49□□□□□ -1.37
MSX1P28360 AC091953.2-201ENST00000623979 160 ntBASIC6.49□□□□□ -1.37
MSX1P28360 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 AC114546.3-201ENST00000623582 1734 ntBASIC6.49□□□□□ -1.37
MSX1P28360 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX1P28360 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX1P28360 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
MSX1P28360 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 WDR44-202ENST00000371822 3877 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX1P28360 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
MSX1P28360 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
MSX1P28360 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
MSX1P28360 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 AC217777.1-201ENST00000570034 1471 ntBASIC6.48□□□□□ -1.37
MSX1P28360 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 AC097504.1-201ENST00000515103 2415 ntBASIC6.48□□□□□ -1.37
MSX1P28360 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 ELL2P4-201ENST00000446870 1376 ntBASIC6.48□□□□□ -1.37
MSX1P28360 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
MSX1P28360 Y_RNA.149-201ENST00000363558 117 ntBASIC6.48□□□□□ -1.37
MSX1P28360 PARD3-204ENST00000374768 799 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 RNU4-70P-201ENST00000384579 139 ntBASIC6.48□□□□□ -1.37
MSX1P28360 MIR1-2-201ENST00000384961 85 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 FAM183DP-201ENST00000421987 399 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC233981.1-201ENST00000423224 461 ntBASIC6.48□□□□□ -1.37
MSX1P28360 CYP4F32P-201ENST00000426492 504 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC119618.1-201ENST00000434191 222 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 AL049734.2-201ENST00000441066 616 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 AC073909.1-201ENST00000447112 999 ntBASIC6.48□□□□□ -1.37
MSX1P28360 RPS23P9-201ENST00000448848 438 ntBASIC6.48□□□□□ -1.37
MSX1P28360 SLC25A18P1-201ENST00000449385 454 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 MTND3P16-201ENST00000452205 344 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AL645937.3-201ENST00000453647 936 ntBASIC6.48□□□□□ -1.37
MSX1P28360 U8.20-201ENST00000459445 131 ntBASIC6.48□□□□□ -1.37
MSX1P28360 RPS4XP10-201ENST00000465034 731 ntBASIC6.48□□□□□ -1.37
MSX1P28360 SLC25A51P1-201ENST00000468432 871 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AL161747.1-201ENST00000480068 358 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AL591122.1-201ENST00000487348 492 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.48□□□□□ -1.37
MSX1P28360 SCARNA6-201ENST00000515982 265 ntBASIC6.48□□□□□ -1.37
MSX1P28360 RNU6-1271P-201ENST00000517049 105 ntBASIC6.48□□□□□ -1.37
MSX1P28360 RNU6-1220P-201ENST00000517126 108 ntBASIC6.48□□□□□ -1.37
MSX1P28360 RN7SKP283-201ENST00000517197 270 ntBASIC6.48□□□□□ -1.37
MSX1P28360 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX1P28360 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
MSX1P28360 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC6.48□□□□□ -1.37
MSX1P28360 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC6.48□□□□□ -1.37
MSX1P28360 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms