Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RPS3AP41-201ENST00000462701 778 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC078857.1-201ENST00000469870 667 ntBASIC5.32□□□□□ -1.56
BDNFP23560 SETP6-201ENST00000479329 568 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC012170.1-201ENST00000495139 359 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.32□□□□□ -1.56
BDNFP23560 PRELID3BP7-201ENST00000503606 469 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 AC113430.1-201ENST00000506872 718 ntBASIC5.32□□□□□ -1.56
BDNFP23560 MRPS33P2-201ENST00000507850 322 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC016559.2-201ENST00000510759 359 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.32□□□□□ -1.56
BDNFP23560 AC098976.1-201ENST00000513014 541 ntBASIC5.32□□□□□ -1.56
BDNFP23560 BTF3P13-201ENST00000513224 490 ntBASIC5.32□□□□□ -1.56
BDNFP23560 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.32□□□□□ -1.56
BDNFP23560 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.32□□□□□ -1.56
BDNFP23560 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.32□□□□□ -1.56
BDNFP23560 AP003717.3-201ENST00000544832 1180 ntBASIC5.32□□□□□ -1.56
BDNFP23560 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.32□□□□□ -1.56
BDNFP23560 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.32□□□□□ -1.56
BDNFP23560 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.32□□□□□ -1.56
BDNFP23560 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC5.32□□□□□ -1.56
BDNFP23560 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC5.32□□□□□ -1.56
BDNFP23560 EIF1P5-201ENST00000585002 234 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.32□□□□□ -1.56
BDNFP23560 LLPHP1-201ENST00000603571 367 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC005191.1-201ENST00000603950 358 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC087783.2-201ENST00000605070 562 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.32□□□□□ -1.56
BDNFP23560 AL049539.1-201ENST00000611964 459 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC087385.3-201ENST00000620477 187 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AC097460.3-201ENST00000623099 442 ntBASIC5.32□□□□□ -1.56
BDNFP23560 AP006248.3-201ENST00000623580 594 ntBASIC5.32□□□□□ -1.56
BDNFP23560 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.32□□□□□ -1.56
BDNFP23560 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
BDNFP23560 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
BDNFP23560 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
BDNFP23560 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
BDNFP23560 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
BDNFP23560 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.32□□□□□ -1.56
BDNFP23560 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BDNFP23560 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
BDNFP23560 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
BDNFP23560 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 AL356489.2-201ENST00000566968 3528 ntBASIC5.31□□□□□ -1.56
BDNFP23560 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 MFSD8-213ENST00000641134 1327 ntBASIC5.31□□□□□ -1.56
BDNFP23560 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
BDNFP23560 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
BDNFP23560 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 SNORA70.10-201ENST00000384515 134 ntBASIC5.31□□□□□ -1.56
BDNFP23560 AP002530.1-201ENST00000405705 684 ntBASIC5.31□□□□□ -1.56
BDNFP23560 PRELID3BP11-201ENST00000414230 479 ntBASIC5.31□□□□□ -1.56
BDNFP23560 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.31□□□□□ -1.56
BDNFP23560 AF186996.5-201ENST00000418098 904 ntBASIC5.31□□□□□ -1.56
BDNFP23560 AC004448.2-201ENST00000422360 586 ntBASIC5.31□□□□□ -1.56
BDNFP23560 COX6CP13-201ENST00000428703 226 ntBASIC5.31□□□□□ -1.56
BDNFP23560 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.31□□□□□ -1.56
BDNFP23560 FABP5P3-201ENST00000437960 408 ntBASIC5.31□□□□□ -1.56
BDNFP23560 AC112498.1-201ENST00000444401 332 ntBASIC5.31□□□□□ -1.56
BDNFP23560 EIF2S2P2-201ENST00000447161 982 ntBASIC5.31□□□□□ -1.56
BDNFP23560 PPIAP3-201ENST00000450588 505 ntBASIC5.31□□□□□ -1.56
BDNFP23560 NDUFS5P3-201ENST00000450668 321 ntBASIC5.31□□□□□ -1.56
BDNFP23560 RPS3AP53-201ENST00000454716 778 ntBASIC5.31□□□□□ -1.56
BDNFP23560 AC005412.2-201ENST00000492004 341 ntBASIC5.31□□□□□ -1.56
BDNFP23560 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC5.31□□□□□ -1.56
BDNFP23560 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.31□□□□□ -1.56
BDNFP23560 MTND2P31-201ENST00000512602 616 ntBASIC5.31□□□□□ -1.56
BDNFP23560 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.31□□□□□ -1.56
BDNFP23560 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.31□□□□□ -1.56
BDNFP23560 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.31□□□□□ -1.56
BDNFP23560 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.31□□□□□ -1.56
BDNFP23560 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.31□□□□□ -1.56
BDNFP23560 AC012339.2-201ENST00000523996 453 ntBASIC5.31□□□□□ -1.56
BDNFP23560 BRD9P1-201ENST00000529855 560 ntBASIC5.31□□□□□ -1.56
BDNFP23560 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.31□□□□□ -1.56
BDNFP23560 AC005520.3-201ENST00000602874 370 ntBASIC5.31□□□□□ -1.56
BDNFP23560 AC119501.1-201ENST00000603646 475 ntBASIC5.31□□□□□ -1.56
BDNFP23560 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 AC112503.2-201ENST00000609005 552 ntBASIC5.31□□□□□ -1.56
BDNFP23560 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 AP001784.1-201ENST00000624107 428 ntBASIC5.31□□□□□ -1.56
BDNFP23560 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC5.31□□□□□ -1.56
BDNFP23560 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.3□□□□□ -1.56
BDNFP23560 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
BDNFP23560 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
BDNFP23560 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
BDNFP23560 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms