Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NDUFB4P4-201ENST00000404822 243 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.13□□□□□ -1.75
COL5A1P20908 CDY14P-201ENST00000431260 1014 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 CDY12P-201ENST00000440679 1015 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.13□□□□□ -1.75
COL5A1P20908 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.13□□□□□ -1.75
COL5A1P20908 CDY13P-201ENST00000445813 1015 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.13□□□□□ -1.75
COL5A1P20908 CDY23P-201ENST00000451661 1014 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 RPL23AP81-201ENST00000455252 467 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.13□□□□□ -1.75
COL5A1P20908 OR7E10P-201ENST00000526420 991 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 CYCSP28-201ENST00000534284 321 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 GTF2IP22-201ENST00000554443 182 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.13□□□□□ -1.75
COL5A1P20908 RPL23AP97-201ENST00000568955 471 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 AC027455.1-201ENST00000574104 594 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 AL583832.1-201ENST00000603227 784 ntBASIC4.13□□□□□ -1.75
COL5A1P20908 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
COL5A1P20908 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL5A1P20908 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL5A1P20908 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
COL5A1P20908 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL5A1P20908 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
COL5A1P20908 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.12□□□□□ -1.75
COL5A1P20908 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
COL5A1P20908 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.12□□□□□ -1.75
COL5A1P20908 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 NXPH1-205ENST00000602349 1953 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 OR56B2P-201ENST00000317102 954 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.12□□□□□ -1.75
COL5A1P20908 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.12□□□□□ -1.75
COL5A1P20908 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 AC115285.1-201ENST00000424879 736 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.12□□□□□ -1.75
COL5A1P20908 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.12□□□□□ -1.75
COL5A1P20908 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 AC090013.1-201ENST00000485147 480 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.12□□□□□ -1.75
COL5A1P20908 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.12□□□□□ -1.75
COL5A1P20908 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.12□□□□□ -1.75
COL5A1P20908 TVP23BP1-201ENST00000557500 617 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 AC120057.2-201ENST00000571520 271 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 CR392039.5-201ENST00000623201 510 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 AC010608.2-201ENST00000624830 470 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.12□□□□□ -1.75
COL5A1P20908 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.12□□□□□ -1.75
COL5A1P20908 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
COL5A1P20908 RLIMP1-201ENST00000339626 1680 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
COL5A1P20908 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.12□□□□□ -1.75
COL5A1P20908 AC092162.3-201ENST00000624511 1624 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.12□□□□□ -1.75
COL5A1P20908 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.12□□□□□ -1.75
COL5A1P20908 AL513548.1-201ENST00000562904 1724 ntBASIC4.12□□□□□ -1.75
COL5A1P20908 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL5A1P20908 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
COL5A1P20908 OR11H4-201ENST00000315409 1082 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.11□□□□□ -1.75
COL5A1P20908 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.11□□□□□ -1.75
COL5A1P20908 EIF2S2P5-201ENST00000457635 968 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.11□□□□□ -1.75
COL5A1P20908 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.11□□□□□ -1.75
COL5A1P20908 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A1P20908 AP000619.3-201ENST00000535634 1127 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
COL5A1P20908 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC4.11□□□□□ -1.75
COL5A1P20908 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.11□□□□□ -1.75
COL5A1P20908 AL157762.1-201ENST00000619612 415 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.11□□□□□ -1.75
COL5A1P20908 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
COL5A1P20908 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A1P20908 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A1P20908 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL5A1P20908 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.11□□□□□ -1.75
COL5A1P20908 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.11□□□□□ -1.75
COL5A1P20908 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.11□□□□□ -1.75
COL5A1P20908 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
COL5A1P20908 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A1P20908 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A1P20908 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A1P20908 RNU6-316P-201ENST00000391027 107 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A1P20908 KRR1P1-201ENST00000419430 803 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 AL050321.1-201ENST00000432363 400 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A1P20908 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.11□□□□□ -1.75
COL5A1P20908 ATP1B1P1-201ENST00000509767 915 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.11□□□□□ -1.75
COL5A1P20908 SRGNP1-201ENST00000603392 451 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 AC090912.3-201ENST00000609775 533 ntBASIC4.11□□□□□ -1.75
COL5A1P20908 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A1P20908 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms