Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 AL121950.1-201ENST00000624993 2077 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
HOXD4P09016 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 RNU4-7P-201ENST00000364758 141 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 MIR421-201ENST00000365696 85 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HOXD4P09016 AC068538.1-201ENST00000376856 336 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HOXD4P09016 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HOXD4P09016 RNA5SP345-201ENST00000410646 108 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXD4P09016 AC073136.2-201ENST00000417282 849 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 EIF4EP1-201ENST00000422311 642 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 RPS27AP7-201ENST00000422792 455 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 HSFY1P1-201ENST00000423928 1178 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 FABP7P1-201ENST00000424004 391 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXD4P09016 AC023141.6-201ENST00000429418 337 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXD4P09016 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXD4P09016 AL162591.2-201ENST00000449634 317 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 FGF7P3-201ENST00000454645 303 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 RN7SL817P-201ENST00000480777 288 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AC026979.1-201ENST00000492525 396 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXD4P09016 AC104629.1-201ENST00000494226 508 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AC104971.1-201ENST00000495117 578 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 SCARNA22-201ENST00000503991 125 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AK3P4-201ENST00000504283 583 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AC111000.3-201ENST00000508057 576 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXD4P09016 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXD4P09016 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXD4P09016 CD24P2-201ENST00000565486 219 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXD4P09016 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXD4P09016 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXD4P09016 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXD4P09016 AL137072.1-201ENST00000603444 466 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 IMMP1LP1-201ENST00000605170 488 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 FAM27B-201ENST00000610601 213 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AC006338.2-201ENST00000616864 791 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXD4P09016 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXD4P09016 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 AC017104.4-201ENST00000636283 1592 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 AC110792.3-201ENST00000595906 1614 ntBASIC4.34□□□□□ -1.71
HOXD4P09016 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.34□□□□□ -1.71
HOXD4P09016 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXD4P09016 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.34□□□□□ -1.72
HOXD4P09016 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HOXD4P09016 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.72
HOXD4P09016 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.34□□□□□ -1.72
HOXD4P09016 AC063976.2-201ENST00000425667 3556 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HOXD4P09016 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HOXD4P09016 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HOXD4P09016 AC008758.3-201ENST00000507003 1829 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 AL592494.2-201ENST00000425455 1548 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXD4P09016 DHX40P1-201ENST00000588725 1412 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 MFSD8-242ENST00000641690 4199 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXD4P09016 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
HOXD4P09016 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HOXD4P09016 RNU6-1251P-201ENST00000364502 107 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 RNU6-40P-201ENST00000384254 107 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 MIR708-201ENST00000390708 88 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 SNORA68.2-201ENST00000391263 128 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.33□□□□□ -1.72
HOXD4P09016 TBCAP2-201ENST00000416175 326 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 GLUD1P9-201ENST00000420997 1173 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXD4P09016 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXD4P09016 AC092162.1-201ENST00000432828 434 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.33□□□□□ -1.72
HOXD4P09016 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXD4P09016 AC073073.1-201ENST00000493920 463 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXD4P09016 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.33□□□□□ -1.72
HOXD4P09016 CAB39P1-201ENST00000502277 460 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXD4P09016 AC108157.1-201ENST00000510511 539 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXD4P09016 HMGN1P15-201ENST00000513870 295 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXD4P09016 MYL12AP1-201ENST00000518490 515 ntBASIC4.33□□□□□ -1.72
HOXD4P09016 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms