Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSH4O15457 RN7SKP34-201ENST00000516142 244 ntBASIC4.82□□□□□ -1.64
MSH4O15457 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH4O15457 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH4O15457 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH4O15457 AC138701.1-201ENST00000524329 714 ntBASIC4.82□□□□□ -1.64
MSH4O15457 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.82□□□□□ -1.64
MSH4O15457 TVP23BP1-201ENST00000557500 617 ntBASIC4.82□□□□□ -1.64
MSH4O15457 RN7SL176P-201ENST00000580352 264 ntBASIC4.82□□□□□ -1.64
MSH4O15457 MIR4697-201ENST00000582977 78 ntBASIC4.82□□□□□ -1.64
MSH4O15457 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH4O15457 AC009303.3-201ENST00000591103 736 ntBASIC4.82□□□□□ -1.64
MSH4O15457 AL451049.1-201ENST00000608672 497 ntBASIC4.82□□□□□ -1.64
MSH4O15457 AC107905.1-201ENST00000616204 426 ntBASIC4.82□□□□□ -1.64
MSH4O15457 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC4.82□□□□□ -1.64
MSH4O15457 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH4O15457 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH4O15457 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSH4O15457 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH4O15457 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
MSH4O15457 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.82□□□□□ -1.64
MSH4O15457 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH4O15457 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH4O15457 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH4O15457 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH4O15457 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH4O15457 LARP1BP1-201ENST00000506036 1359 ntBASIC4.81□□□□□ -1.64
MSH4O15457 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSH4O15457 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
MSH4O15457 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH4O15457 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH4O15457 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH4O15457 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH4O15457 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH4O15457 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH4O15457 PPIAP21-201ENST00000464473 501 ntBASIC4.81□□□□□ -1.64
MSH4O15457 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH4O15457 PGBD4P4-201ENST00000509673 613 ntBASIC4.81□□□□□ -1.64
MSH4O15457 KCTD9P2-201ENST00000512203 1013 ntBASIC4.81□□□□□ -1.64
MSH4O15457 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.81□□□□□ -1.64
MSH4O15457 SETP1-201ENST00000556014 845 ntBASIC4.81□□□□□ -1.64
MSH4O15457 AC025884.1-201ENST00000556034 378 ntBASIC4.81□□□□□ -1.64
MSH4O15457 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH4O15457 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH4O15457 AC136624.4-201ENST00000573044 370 ntBASIC4.81□□□□□ -1.64
MSH4O15457 AC117490.2-201ENST00000610042 594 ntBASIC4.81□□□□□ -1.64
MSH4O15457 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH4O15457 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH4O15457 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH4O15457 VPS35P1-201ENST00000563400 1518 ntBASIC4.81□□□□□ -1.64
MSH4O15457 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH4O15457 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSH4O15457 LINC01355-201ENST00000566551 5444 ntBASIC4.81□□□□□ -1.64
MSH4O15457 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSH4O15457 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
MSH4O15457 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH4O15457 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.81□□□□□ -1.64
MSH4O15457 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH4O15457 AC009951.1-201ENST00000623674 2614 ntBASIC4.8□□□□□ -1.64
MSH4O15457 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 AC005261.4-201ENST00000600047 1385 ntBASIC4.8□□□□□ -1.64
MSH4O15457 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 MAPK10-320ENST00000641462 6696 ntBASIC4.8□□□□□ -1.64
MSH4O15457 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 FABP12P1-201ENST00000401911 322 ntBASIC4.8□□□□□ -1.64
MSH4O15457 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH4O15457 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.8□□□□□ -1.64
MSH4O15457 OR6C64P-201ENST00000419708 825 ntBASIC4.8□□□□□ -1.64
MSH4O15457 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.8□□□□□ -1.64
MSH4O15457 RCC2P2-201ENST00000422174 918 ntBASIC4.8□□□□□ -1.64
MSH4O15457 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.8□□□□□ -1.64
MSH4O15457 BTF3P10-201ENST00000433415 495 ntBASIC4.8□□□□□ -1.64
MSH4O15457 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 ARL4AP3-201ENST00000441452 574 ntBASIC4.8□□□□□ -1.64
MSH4O15457 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH4O15457 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.8□□□□□ -1.64
MSH4O15457 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH4O15457 RPS20P4-201ENST00000461659 355 ntBASIC4.8□□□□□ -1.64
MSH4O15457 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
MSH4O15457 RN7SL41P-201ENST00000476144 297 ntBASIC4.8□□□□□ -1.64
MSH4O15457 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
MSH4O15457 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.8□□□□□ -1.64
MSH4O15457 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH4O15457 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH4O15457 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH4O15457 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.8□□□□□ -1.64
MSH4O15457 AL390334.1-201ENST00000556395 450 ntBASIC4.8□□□□□ -1.64
MSH4O15457 PARP1P2-201ENST00000556806 195 ntBASIC4.8□□□□□ -1.64
MSH4O15457 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH4O15457 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH4O15457 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH4O15457 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
MSH4O15457 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH4O15457 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
MSH4O15457 AC105074.1-201ENST00000623380 3095 ntBASIC4.8□□□□□ -1.64
MSH4O15457 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms