Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC074250.1-201ENST00000511117 192 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 AC022655.2-201ENST00000577280 318 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 COX6CP4-201ENST00000605798 228 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 EIF3EP2-201ENST00000423042 1814 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 USP9YP4-201ENST00000424401 1745 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 AL355596.1-201ENST00000565399 3996 ntBASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.46□□□□□ -1.54
SHANK3Q9BYB0 MIR183-201ENST00000384958 110 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 MIR1911-201ENST00000410783 80 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AL390879.2-203ENST00000426943 1121 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 CEACAMP1-201ENST00000434624 1035 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 VN1R32P-201ENST00000452234 905 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 RPS4XP12-201ENST00000461747 709 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AC090013.1-201ENST00000485147 480 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 KRT19P6-201ENST00000510983 209 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 RNA5SP497-201ENST00000516081 97 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 MIR3651-201ENST00000630427 90 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 OR4A15-201ENST00000314706 1035 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 Y_RNA.500-201ENST00000384466 111 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 PPIAP13-201ENST00000434706 478 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 ACTR3P3-201ENST00000480448 893 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 HSPE1P5-201ENST00000561489 272 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AC110743.1-201ENST00000584870 478 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 MIR5684-201ENST00000585074 65 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 ZNF402P-201ENST00000404435 3100 ntBASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SHANK3Q9BYB0 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 AL022393.1-201ENST00000625142 1677 ntBASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 TCEA1P4-201ENST00000415066 844 ntBASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 AL358472.1-201ENST00000431295 329 ntBASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 AC006011.1-201ENST00000442758 349 ntBASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 AC124068.1-201ENST00000563131 678 ntBASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 MIR6852-201ENST00000621699 66 ntBASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 U6.105-201ENST00000637379 88 ntBASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SHANK3Q9BYB0 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 RNU6-213P-201ENST00000384051 104 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 SNORA5A-201ENST00000384111 134 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms