Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD1Q96NR3 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD1Q96NR3 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
PTCHD1Q96NR3 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
PTCHD1Q96NR3 AC003973.3-201ENST00000624863 2822 ntBASIC5.8□□□□□ -1.48
PTCHD1Q96NR3 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
PTCHD1Q96NR3 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AP002001.2-201ENST00000529025 1469 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 Y_RNA.11-201ENST00000362375 109 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 SNORA21-201ENST00000362423 132 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 RNA5SP110-201ENST00000362638 115 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 RNU1-134P-201ENST00000362935 165 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 RNU2-22P-201ENST00000411266 212 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 HMGB1P11-201ENST00000413899 637 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 TRIM60P10Y-201ENST00000425589 751 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 VDAC1P6-201ENST00000430062 855 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 BMS1P19-201ENST00000433925 393 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 TRIM60P8Y-201ENST00000436338 762 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AMYP1-201ENST00000440059 1023 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AL022237.1-201ENST00000446663 358 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 NFU1P2-201ENST00000448700 469 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC002553.3-201ENST00000453002 341 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 RPL18AP17-201ENST00000455326 198 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC103563.5-201ENST00000455643 364 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC073594.1-201ENST00000462065 364 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 RN7SL221P-201ENST00000466190 281 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC093824.1-201ENST00000508796 343 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 ARL2BPP6-201ENST00000512757 439 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 RN7SKP70-201ENST00000516655 271 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC092332.1-201ENST00000563684 829 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC022884.3-201ENST00000579571 248 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC104458.1-201ENST00000608243 463 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC055764.2-201ENST00000610089 670 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC079395.2-201ENST00000610982 737 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC006338.1-201ENST00000618453 749 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AL158209.2-201ENST00000619266 216 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AL139089.1-201ENST00000620372 975 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 DUXAP9-208ENST00000622815 614 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC120349.2-201ENST00000625002 298 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC099654.5-201ENST00000636479 350 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 FAM157B-203ENST00000639350 358 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 RNF6P1-201ENST00000444889 1784 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC011416.1-201ENST00000514947 1732 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 ZNF37BP-203ENST00000452306 1352 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 AC024587.1-201ENST00000505925 2157 ntBASIC5.79□□□□□ -1.48
PTCHD1Q96NR3 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 AL662795.2-201ENST00000624252 3706 ntBASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 AC096921.2-201ENST00000561507 1916 ntBASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 Y_RNA.9-201ENST00000362354 101 ntBASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 Y_RNA.25-201ENST00000362528 102 ntBASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.78□□□□□ -1.48
PTCHD1Q96NR3 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms