Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC3.89□□□□□ -1.79
CHD3Q12873 RN7SL176P-201ENST00000580352 264 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 AC017100.2-201ENST00000584628 355 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 AC138627.1-204ENST00000641894 765 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CHD3Q12873 MTCO1P22-201ENST00000604619 1360 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
CHD3Q12873 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC3.89□□□□□ -1.79
CHD3Q12873 VN2R3P-201ENST00000422626 1412 ntBASIC3.89□□□□□ -1.79
CHD3Q12873 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.89□□□□□ -1.79
CHD3Q12873 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.89□□□□□ -1.79
CHD3Q12873 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 RNA5SP317-201ENST00000410176 116 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 RNA5SP311-201ENST00000411290 116 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CHD3Q12873 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 AC105137.1-201ENST00000484355 562 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 NPM1P41-201ENST00000512920 831 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 RNA5SP315-201ENST00000516340 116 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 RNA5SP312-201ENST00000517068 116 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.88□□□□□ -1.79
CHD3Q12873 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.88□□□□□ -1.79
CHD3Q12873 SLC25A36P1-201ENST00000590111 465 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 OR7A19P-201ENST00000608051 733 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 AC131238.1-201ENST00000617135 328 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 RNA5SP196-201ENST00000625967 102 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 CARF-203ENST00000414439 2099 ntTSL 2 BASIC3.88□□□□□ -1.79
CHD3Q12873 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.88□□□□□ -1.79
CHD3Q12873 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CHD3Q12873 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
CHD3Q12873 RAD17P1-201ENST00000418130 2042 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.88□□□□□ -1.79
CHD3Q12873 AL121657.1-201ENST00000327215 531 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CHD3Q12873 MIR195-201ENST00000385194 87 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CHD3Q12873 AL592291.1-201ENST00000403830 352 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.88□□□□□ -1.79
CHD3Q12873 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.88□□□□□ -1.79
CHD3Q12873 AL162591.2-201ENST00000449634 317 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 ISCUP1-201ENST00000454451 448 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.88□□□□□ -1.79
CHD3Q12873 RPL5P16-201ENST00000471467 790 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.88□□□□□ -1.79
CHD3Q12873 AC109635.6-201ENST00000525487 1113 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC3.88□□□□□ -1.79
CHD3Q12873 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CHD3Q12873 FKBP1BP1-201ENST00000553366 325 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 ARF4P1-201ENST00000605447 541 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 AC100847.1-201ENST00000611316 481 ntBASIC3.88□□□□□ -1.79
CHD3Q12873 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.88□□□□□ -1.79
CHD3Q12873 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC3.88□□□□□ -1.79
CHD3Q12873 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CHD3Q12873 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
CHD3Q12873 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CHD3Q12873 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CHD3Q12873 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CHD3Q12873 RPS29P17-201ENST00000430795 166 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 RPEP2-201ENST00000432149 701 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 HSFY6P-201ENST00000445573 403 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AC108475.1-201ENST00000507880 950 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 IGLVIV-65-201ENST00000517313 360 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC3.87□□□□□ -1.79
CHD3Q12873 AC087477.6-201ENST00000559595 843 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.87□□□□□ -1.79
CHD3Q12873 AP001160.4-201ENST00000596971 382 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AC005520.3-201ENST00000602874 370 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AC097505.1-201ENST00000610199 565 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AL035461.2-201ENST00000619201 524 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC3.87□□□□□ -1.79
CHD3Q12873 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CHD3Q12873 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
CHD3Q12873 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.87□□□□□ -1.79
CHD3Q12873 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
CHD3Q12873 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CHD3Q12873 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.87□□□□□ -1.79
CHD3Q12873 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.87□□□□□ -1.79
CHD3Q12873 AL672167.2-201ENST00000377164 879 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.87□□□□□ -1.79
CHD3Q12873 AL607077.1-201ENST00000401718 499 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AC009237.10-201ENST00000414112 510 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AL356387.2-201ENST00000422272 243 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AL691449.1-201ENST00000426570 421 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 NMNAT1P2-201ENST00000435192 860 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.87□□□□□ -1.79
CHD3Q12873 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
CHD3Q12873 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.87□□□□□ -1.79
CHD3Q12873 AC106785.1-201ENST00000565935 262 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AP005901.4-201ENST00000577336 569 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.87□□□□□ -1.79
CHD3Q12873 AC008638.3-201ENST00000603341 463 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 AL161756.2-201ENST00000604597 246 ntBASIC3.87□□□□□ -1.79
CHD3Q12873 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CHD3Q12873 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC3.87□□□□□ -1.79
CHD3Q12873 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CHD3Q12873 KPNA2P2-201ENST00000419546 1489 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 AP001002.1-201ENST00000625148 1513 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 LINC00622-201ENST00000562811 1570 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 AC108467.2-201ENST00000617640 1597 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms