Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HDAC4P56524 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.18□□□□□ -1.58
HDAC4P56524 AL022393.1-201ENST00000625142 1677 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HDAC4P56524 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.18□□□□□ -1.58
HDAC4P56524 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.18□□□□□ -1.58
HDAC4P56524 ECM1P2-201ENST00000503354 1577 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
HDAC4P56524 OR52B1P-201ENST00000316506 909 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HDAC4P56524 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC5.18□□□□□ -1.58
HDAC4P56524 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HDAC4P56524 AL078599.1-201ENST00000402075 293 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC5.18□□□□□ -1.58
HDAC4P56524 AL445183.3-201ENST00000414168 502 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.18□□□□□ -1.58
HDAC4P56524 QRSL1P2-201ENST00000418582 964 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 PNRC2P1-201ENST00000423940 420 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 AC006994.1-201ENST00000438212 839 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 AC069540.1-201ENST00000446320 988 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 BTF3P6-201ENST00000448054 499 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.18□□□□□ -1.58
HDAC4P56524 RPL7AP52-201ENST00000458096 790 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.18□□□□□ -1.58
HDAC4P56524 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.18□□□□□ -1.58
HDAC4P56524 RPSAP50-201ENST00000481955 852 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5.18□□□□□ -1.58
HDAC4P56524 RPL21P47-201ENST00000483696 477 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.18□□□□□ -1.58
HDAC4P56524 MRPS33P2-201ENST00000507850 322 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 AC147055.3-201ENST00000510547 851 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.18□□□□□ -1.58
HDAC4P56524 SNORA31.13-201ENST00000516624 135 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 RN7SKP66-201ENST00000516681 231 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 RN7SKP147-201ENST00000517154 244 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
HDAC4P56524 RPL23AP53-201ENST00000521854 457 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 DYNLL1P4-201ENST00000549314 266 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.18□□□□□ -1.58
HDAC4P56524 AL121594.4-201ENST00000556211 1196 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.18□□□□□ -1.58
HDAC4P56524 AC022884.3-201ENST00000579571 248 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC5.18□□□□□ -1.58
HDAC4P56524 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC5.18□□□□□ -1.58
HDAC4P56524 AC104687.2-201ENST00000604442 342 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 MIR6820-201ENST00000611508 62 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 AC078880.5-201ENST00000617845 421 ntBASIC5.18□□□□□ -1.58
HDAC4P56524 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.18□□□□□ -1.58
HDAC4P56524 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HDAC4P56524 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
HDAC4P56524 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDAC4P56524 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HDAC4P56524 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDAC4P56524 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HDAC4P56524 AC103591.2-201ENST00000265259 766 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HDAC4P56524 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HDAC4P56524 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HDAC4P56524 SNORA73.1-201ENST00000363107 205 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 RNU4-4P-201ENST00000364588 130 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 RNU6-354P-201ENST00000383862 107 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 RNU6-481P-201ENST00000384194 107 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 RNU6-610P-201ENST00000384264 107 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 RPL23AP27-201ENST00000415161 451 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC073136.2-201ENST00000417282 849 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AF186996.5-201ENST00000418098 904 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 FABP7P2-201ENST00000429946 379 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC073052.1-201ENST00000440417 714 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 RPL21P133-201ENST00000443666 476 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 RPL7P33-201ENST00000444159 742 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 CYCSP42-201ENST00000450823 238 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC091685.2-201ENST00000454924 864 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 RPL21P18-201ENST00000469899 480 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 RN7SL808P-201ENST00000496066 299 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC5.17□□□□□ -1.58
HDAC4P56524 GTF2IP9-201ENST00000502460 301 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC113430.1-201ENST00000506872 718 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.17□□□□□ -1.58
HDAC4P56524 RFESD-208ENST00000513950 464 ntTSL 5 BASIC5.17□□□□□ -1.58
HDAC4P56524 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC5.17□□□□□ -1.58
HDAC4P56524 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.17□□□□□ -1.58
HDAC4P56524 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC5.17□□□□□ -1.58
HDAC4P56524 AC008083.2-201ENST00000546707 476 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDAC4P56524 HMGN2P6-201ENST00000551091 273 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.17□□□□□ -1.58
HDAC4P56524 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HDAC4P56524 AC106734.1-201ENST00000568646 663 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 MTND1P8-201ENST00000571424 950 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC096553.1-201ENST00000605169 829 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AL445222.1-201ENST00000607259 628 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC018754.1-201ENST00000607486 925 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC068870.2-201ENST00000620635 389 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 AC009452.1-201ENST00000640823 606 ntBASIC5.17□□□□□ -1.58
HDAC4P56524 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.17□□□□□ -1.58
HDAC4P56524 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
HDAC4P56524 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HDAC4P56524 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms