Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA1P49639 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 AC135068.5-201ENST00000624197 983 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HOXA1P49639 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 BX649567.1-201ENST00000642071 1134 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
HOXA1P49639 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
HOXA1P49639 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 GTF2H2B-203ENST00000508065 1432 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC114786.1-201ENST00000512892 1415 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC074029.4-201ENST00000624796 1859 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HOXA1P49639 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HOXA1P49639 AL035419.1-201ENST00000397037 564 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 DNAJC19P6-201ENST00000401853 280 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 GAPDHP42-201ENST00000406848 981 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 OR2AT2P-201ENST00000413438 905 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 RPS7P9-201ENST00000414704 586 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA1P49639 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA1P49639 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA1P49639 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXA1P49639 RPL7P34-201ENST00000433316 712 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 MTCYBP31-201ENST00000438855 1122 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC092647.3-201ENST00000443044 633 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 MRPL35P2-201ENST00000448009 511 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXA1P49639 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC060775.1-201ENST00000518241 520 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 OR7E128P-201ENST00000532736 1024 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC008083.2-201ENST00000546707 476 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC079600.1-201ENST00000550326 297 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 DPPA2P4-201ENST00000563717 878 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 ATP5F1P7-201ENST00000567330 760 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC090312.1-201ENST00000580637 348 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 RN7SL356P-201ENST00000582228 248 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 PCNAP1-202ENST00000595299 752 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC012616.1-201ENST00000600294 197 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC009237.15-201ENST00000610252 501 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC011472.4-201ENST00000615848 491 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AC010975.3-201ENST00000618727 978 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AL158163.2-201ENST00000619110 700 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA1P49639 AC145207.9-201ENST00000623802 325 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 AP002967.1-201ENST00000624203 539 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 U6.107-201ENST00000637108 79 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 5S_rRNA.28-201ENST00000638107 119 ntBASIC4.31□□□□□ -1.72
HOXA1P49639 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXA1P49639 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA1P49639 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA1P49639 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA1P49639 AC092435.4-201ENST00000623012 4159 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AL121950.1-201ENST00000624993 2077 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA1P49639 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 ENSAP3-201ENST00000312710 333 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
HOXA1P49639 RNU4-2-201ENST00000365668 141 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA1P49639 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA1P49639 RNU6-98P-201ENST00000384173 107 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 RNU6-636P-201ENST00000384598 107 ntBASIC4.3□□□□□ -1.72
HOXA1P49639 AC104297.1-201ENST00000393779 870 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms