Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX1P28360 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 Y_RNA.187-201ENST00000363918 113 ntBASIC6.5□□□□□ -1.37
MSX1P28360 RNY1P12-201ENST00000364251 105 ntBASIC6.5□□□□□ -1.37
MSX1P28360 RNU6-952P-201ENST00000391164 108 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC087752.1-201ENST00000391360 558 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AL590762.1-201ENST00000391782 432 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AL590290.1-201ENST00000405336 380 ntBASIC6.5□□□□□ -1.37
MSX1P28360 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX1P28360 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX1P28360 RN7SKP279-201ENST00000411383 298 ntBASIC6.5□□□□□ -1.37
MSX1P28360 RPL23AP30-201ENST00000432419 501 ntBASIC6.5□□□□□ -1.37
MSX1P28360 ERLEC1P1-201ENST00000433806 578 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AMYP1-201ENST00000440059 1023 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AL137792.2-201ENST00000443484 235 ntBASIC6.5□□□□□ -1.37
MSX1P28360 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX1P28360 FAM103A2P-201ENST00000444122 354 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC005517.1-201ENST00000452091 489 ntBASIC6.5□□□□□ -1.37
MSX1P28360 SUMO1P2-201ENST00000452524 304 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX1P28360 RPL32P9-201ENST00000487963 407 ntBASIC6.5□□□□□ -1.37
MSX1P28360 SMURF2P1-201ENST00000514992 481 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX1P28360 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.5□□□□□ -1.37
MSX1P28360 MIR4800-201ENST00000537353 80 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC123904.2-201ENST00000548059 300 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX1P28360 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX1P28360 RN7SL32P-201ENST00000580514 281 ntBASIC6.5□□□□□ -1.37
MSX1P28360 MIR3118-1-201ENST00000581787 76 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX1P28360 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.5□□□□□ -1.37
MSX1P28360 AC007938.3-201ENST00000604965 623 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC121334.2-201ENST00000605387 271 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC004908.1-201ENST00000606572 541 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC104184.1-201ENST00000607513 721 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC244517.12-201ENST00000623581 663 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AL359757.2-201ENST00000624309 274 ntBASIC6.5□□□□□ -1.37
MSX1P28360 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX1P28360 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX1P28360 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX1P28360 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 AL021877.2-201ENST00000624442 10684 ntBASIC6.5□□□□□ -1.37
MSX1P28360 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC6.5□□□□□ -1.37
MSX1P28360 AC092821.2-201ENST00000545710 2042 ntBASIC6.5□□□□□ -1.37
MSX1P28360 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 AL049780.3-201ENST00000624612 1583 ntBASIC6.49□□□□□ -1.37
MSX1P28360 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX1P28360 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.49□□□□□ -1.37
MSX1P28360 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
MSX1P28360 AFP-201ENST00000226359 1914 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.49□□□□□ -1.37
MSX1P28360 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
MSX1P28360 RN7SKP107-201ENST00000364157 290 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RNU6-702P-201ENST00000364982 107 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RNU6-996P-201ENST00000365438 107 ntBASIC6.49□□□□□ -1.37
MSX1P28360 Y_RNA.476-201ENST00000384347 108 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RNU1-56P-201ENST00000391303 164 ntBASIC6.49□□□□□ -1.37
MSX1P28360 AL583835.1-201ENST00000399570 407 ntBASIC6.49□□□□□ -1.37
MSX1P28360 MTCYBP4-201ENST00000401524 249 ntBASIC6.49□□□□□ -1.37
MSX1P28360 AL359634.1-202ENST00000404721 284 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX1P28360 MIR1302-3-201ENST00000408128 138 ntBASIC6.49□□□□□ -1.37
MSX1P28360 AC099535.1-201ENST00000408928 371 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RN7SKP221-201ENST00000410420 301 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RNU2-47P-201ENST00000410649 186 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RN7SKP254-201ENST00000410685 310 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RNU4-14P-201ENST00000410858 122 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RNU2-18P-201ENST00000411224 162 ntBASIC6.49□□□□□ -1.37
MSX1P28360 CBX1P3-201ENST00000413296 527 ntBASIC6.49□□□□□ -1.37
MSX1P28360 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC6.49□□□□□ -1.37
MSX1P28360 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX1P28360 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX1P28360 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC6.49□□□□□ -1.37
MSX1P28360 AC002486.2-201ENST00000447806 590 ntBASIC6.49□□□□□ -1.37
MSX1P28360 SRP68P2-201ENST00000456184 254 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RPL21P71-201ENST00000465598 459 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RN7SL160P-201ENST00000468558 284 ntBASIC6.49□□□□□ -1.37
MSX1P28360 AC091982.1-202ENST00000473923 343 ntBASIC6.49□□□□□ -1.37
MSX1P28360 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC6.49□□□□□ -1.37
MSX1P28360 RN7SL741P-201ENST00000482473 289 ntBASIC6.49□□□□□ -1.37
MSX1P28360 RN7SL849P-201ENST00000485236 295 ntBASIC6.49□□□□□ -1.37
MSX1P28360 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC6.49□□□□□ -1.37
MSX1P28360 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms