Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.41□□□□□ -1.7
SHOX2O60902 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.41□□□□□ -1.7
SHOX2O60902 MIR378J-201ENST00000611988 109 ntBASIC4.41□□□□□ -1.7
SHOX2O60902 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.41□□□□□ -1.7
SHOX2O60902 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC4.41□□□□□ -1.7
SHOX2O60902 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.41□□□□□ -1.7
SHOX2O60902 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHOX2O60902 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHOX2O60902 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.41□□□□□ -1.7
SHOX2O60902 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
SHOX2O60902 USP9YP4-201ENST00000424401 1745 ntBASIC4.41□□□□□ -1.7
SHOX2O60902 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
SHOX2O60902 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.7
SHOX2O60902 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
SHOX2O60902 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SHOX2O60902 AC010928.1-201ENST00000592477 1447 ntBASIC4.4□□□□□ -1.7
SHOX2O60902 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHOX2O60902 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHOX2O60902 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHOX2O60902 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
SHOX2O60902 MIR223-201ENST00000385204 110 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 SNORD66.1-201ENST00000391230 76 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AL607077.1-201ENST00000401718 499 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC4.4□□□□□ -1.71
SHOX2O60902 AP000357.1-201ENST00000409926 1165 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 RN7SKP27-201ENST00000410684 333 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 RHEBP3-201ENST00000411920 351 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.4□□□□□ -1.71
SHOX2O60902 AC093698.1-201ENST00000423843 571 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.4□□□□□ -1.71
SHOX2O60902 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.4□□□□□ -1.71
SHOX2O60902 ATP5HP2-201ENST00000433885 485 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.4□□□□□ -1.71
SHOX2O60902 MTND6P18-201ENST00000439477 513 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 VN1R96P-201ENST00000446052 858 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AC010733.1-201ENST00000451515 401 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.4□□□□□ -1.71
SHOX2O60902 BTF3L4P4-201ENST00000506381 449 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.4□□□□□ -1.71
SHOX2O60902 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SHOX2O60902 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.4□□□□□ -1.71
SHOX2O60902 MORF4L1P3-201ENST00000525966 950 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 HAUS8P1-201ENST00000549005 542 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AC007599.1-201ENST00000568688 1174 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AC011447.4-201ENST00000587562 111 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.4□□□□□ -1.71
SHOX2O60902 AC067838.1-201ENST00000606064 577 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.4□□□□□ -1.71
SHOX2O60902 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.4□□□□□ -1.71
SHOX2O60902 FAM27B-201ENST00000610601 213 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AP001784.1-201ENST00000624107 428 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.4□□□□□ -1.71
SHOX2O60902 NCLP2-201ENST00000416078 1462 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.4□□□□□ -1.71
SHOX2O60902 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHOX2O60902 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHOX2O60902 AC125257.1-201ENST00000560400 2930 ntBASIC4.4□□□□□ -1.71
SHOX2O60902 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHOX2O60902 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
SHOX2O60902 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SHOX2O60902 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SHOX2O60902 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SHOX2O60902 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SHOX2O60902 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SHOX2O60902 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SHOX2O60902 RNA5SP507-201ENST00000363603 121 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SHOX2O60902 RNU1-106P-201ENST00000384382 164 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 MIR3074-201ENST00000384885 81 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 SNORA68.2-201ENST00000391263 128 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 CHEK2P3-201ENST00000416118 248 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 AC013470.3-201ENST00000420252 1194 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC4.39□□□□□ -1.71
SHOX2O60902 AC244033.1-201ENST00000426826 870 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 HMGB3P10-201ENST00000434734 572 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 VN1R54P-201ENST00000435210 1049 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 TPT1P13-201ENST00000449760 499 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 AC234781.3-201ENST00000452540 973 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 RPS5P7-201ENST00000456664 608 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 snoU13.20-201ENST00000459180 104 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 RPL35AP28-201ENST00000459730 331 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 STRADBP1-201ENST00000478954 1281 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 AC068587.1-201ENST00000483613 781 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 AC008953.1-201ENST00000497334 318 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.39□□□□□ -1.71
SHOX2O60902 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.39□□□□□ -1.71
SHOX2O60902 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.39□□□□□ -1.71
SHOX2O60902 NPM1P6-201ENST00000521088 871 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.39□□□□□ -1.71
SHOX2O60902 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.39□□□□□ -1.71
SHOX2O60902 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.39□□□□□ -1.71
SHOX2O60902 AP001804.2-201ENST00000533932 910 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 AC092851.1-201ENST00000535964 478 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 HMGN2P6-201ENST00000551091 273 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.39□□□□□ -1.71
SHOX2O60902 AC079171.1-201ENST00000568788 914 ntBASIC4.39□□□□□ -1.71
SHOX2O60902 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.39□□□□□ -1.71
SHOX2O60902 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.39□□□□□ -1.71
SHOX2O60902 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms