Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC009852.2-201ENST00000567898 485 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 MIR4330-201ENST00000579077 105 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 RN7SL622P-201ENST00000585292 275 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC011487.3-201ENST00000593607 453 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 AC087283.1-201ENST00000604029 1074 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 AL139344.1-201ENST00000605228 195 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC015722.2-201ENST00000622210 551 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 AC091905.4-201ENST00000623432 202 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LMX1BO60663 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 CR382285.2-201ENST00000624662 1495 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
LMX1BO60663 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.42□□□□□ -1.7
LMX1BO60663 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
LMX1BO60663 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LMX1BO60663 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.42□□□□□ -1.7
LMX1BO60663 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
LMX1BO60663 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LMX1BO60663 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.41□□□□□ -1.7
LMX1BO60663 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LMX1BO60663 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LMX1BO60663 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
LMX1BO60663 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.41□□□□□ -1.7
LMX1BO60663 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LMX1BO60663 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
LMX1BO60663 RNU5B-1-201ENST00000363286 116 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AP002784.2-201ENST00000397300 549 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 ATF1P1-201ENST00000406040 927 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AL445213.1-201ENST00000412589 747 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 FAR2P2-201ENST00000413041 594 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.41□□□□□ -1.7
LMX1BO60663 ZNF885P-201ENST00000420174 1098 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.41□□□□□ -1.7
LMX1BO60663 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.41□□□□□ -1.7
LMX1BO60663 FAR2P4-202ENST00000425399 584 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.41□□□□□ -1.7
LMX1BO60663 RPL12P18-201ENST00000437175 325 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 RPL21P133-201ENST00000443666 476 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 RPS27P5-201ENST00000444247 244 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 MRPL35P2-201ENST00000448009 511 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC112492.1-201ENST00000449607 712 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC009220.1-201ENST00000451614 275 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.41□□□□□ -1.7
LMX1BO60663 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.41□□□□□ -1.7
LMX1BO60663 PRDX3P4-201ENST00000470828 747 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.41□□□□□ -1.7
LMX1BO60663 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC4.41□□□□□ -1.7
LMX1BO60663 AC021146.7-201ENST00000509604 775 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 GTF2F2P1-201ENST00000511083 675 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.41□□□□□ -1.7
LMX1BO60663 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.41□□□□□ -1.7
LMX1BO60663 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.41□□□□□ -1.7
LMX1BO60663 AC005868.1-201ENST00000536421 331 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 CYB5AP5-201ENST00000549779 389 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.41□□□□□ -1.7
LMX1BO60663 ZNF971P-201ENST00000562068 1249 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.41□□□□□ -1.7
LMX1BO60663 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.41□□□□□ -1.7
LMX1BO60663 VN1R78P-201ENST00000597393 564 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AL358072.1-201ENST00000604156 575 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC025588.2-201ENST00000604851 466 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC245008.1-201ENST00000608123 476 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.41□□□□□ -1.7
LMX1BO60663 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.41□□□□□ -1.7
LMX1BO60663 AC092106.3-201ENST00000611308 722 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 RMST_10.1-201ENST00000616309 154 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
LMX1BO60663 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.41□□□□□ -1.7
LMX1BO60663 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LMX1BO60663 HSPA8P14-201ENST00000552265 1805 ntBASIC4.41□□□□□ -1.7
LMX1BO60663 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LMX1BO60663 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LMX1BO60663 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
LMX1BO60663 CASC19-221ENST00000641309 1382 ntBASIC4.4□□□□□ -1.7
LMX1BO60663 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.4□□□□□ -1.7
LMX1BO60663 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.4□□□□□ -1.7
LMX1BO60663 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
LMX1BO60663 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
LMX1BO60663 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
LMX1BO60663 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
LMX1BO60663 AC099786.3-201ENST00000565735 1410 ntBASIC4.4□□□□□ -1.7
LMX1BO60663 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
LMX1BO60663 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
LMX1BO60663 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
LMX1BO60663 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
LMX1BO60663 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.4□□□□□ -1.7
LMX1BO60663 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
LMX1BO60663 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LMX1BO60663 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
LMX1BO60663 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
LMX1BO60663 RNA5SP123-201ENST00000363244 119 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms