Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AL133270.1-201ENST00000402635 279 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 RPL31P52-201ENST00000407532 367 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 COX6B1P1-201ENST00000415962 213 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 OR13Z1P-201ENST00000416141 834 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 EIF4A1P1-201ENST00000420241 934 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 RPL35AP28-201ENST00000459730 331 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 MTND6P6-201ENST00000478031 263 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC015908.1-201ENST00000478739 476 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC231760.1-201ENST00000498002 260 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 PPM1AP1-201ENST00000502740 1135 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 HMGB3P16-201ENST00000508037 287 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 OR5D15P-201ENST00000531671 942 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC008033.2-201ENST00000542626 177 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 Mico1.1-201ENST00000611698 204 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AL049539.1-201ENST00000611964 459 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC009318.3-201ENST00000616916 503 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC073569.3-201ENST00000619055 682 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AP000943.4-201ENST00000622912 357 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC024595.1-201ENST00000623088 387 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 AC100871.1-201ENST00000507871 1456 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 PCAT14-202ENST00000627127 3935 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS28Q9UK41 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 RNU6-543P-201ENST00000362576 108 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 RNU4-44P-201ENST00000363050 141 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AL035419.1-201ENST00000397037 564 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AP002784.2-201ENST00000397300 549 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 U3.32-201ENST00000408116 212 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS28Q9UK41 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AL592494.2-201ENST00000425455 1548 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AL772161.1-201ENST00000439130 476 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC073648.4-201ENST00000442655 781 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC112498.1-201ENST00000444401 332 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC068135.1-201ENST00000446164 246 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 EEF1A1P1-201ENST00000447052 739 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 RPL37P3-201ENST00000456825 293 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 RPS3AP41-201ENST00000462701 778 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 RPL23AP71-201ENST00000470966 469 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 IRF5P1-201ENST00000504852 2164 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 ASNSP1-201ENST00000518311 1939 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC105031.1-201ENST00000518550 476 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 BRD9P1-201ENST00000529855 560 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 PCNPP1-201ENST00000552501 511 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AL390726.5-202ENST00000564800 256 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC090751.1-201ENST00000566966 267 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC005084.1-201ENST00000605160 304 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC021851.1-201ENST00000608537 1082 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC019206.1-201ENST00000621938 425 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 AC138907.10-201ENST00000623708 983 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 CDRT1-208ENST00000630868 794 ntBASIC5.1□□□□□ -1.59
VPS28Q9UK41 ATE1-AS1-202ENST00000636460 506 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms