Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AL121657.1-201ENST00000327215 531 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 RNA5SP232-201ENST00000364144 119 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 RNU6-259P-201ENST00000383999 107 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 EIF4A1P1-201ENST00000420241 934 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AL137845.2-201ENST00000444292 988 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 MTCYBP42-201ENST00000444653 1130 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 EEF1B2P3-201ENST00000447718 678 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC093166.3-201ENST00000448785 303 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC009963.3-201ENST00000458090 486 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 CTSLP6-201ENST00000458273 1002 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC008629.2-201ENST00000503783 483 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC092349.1-201ENST00000504903 310 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 HIGD1AP17-201ENST00000554576 276 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 OR1E3-201ENST00000575608 948 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 EIF1P6-201ENST00000600054 334 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC068768.2-201ENST00000602352 343 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 BNIP3P9-201ENST00000603714 553 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC124916.2-201ENST00000604416 224 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AL365503.1-201ENST00000605247 905 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 UBE2Q2P2-203ENST00000613592 761 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC015660.5-201ENST00000623238 564 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AC125336.1-201ENST00000508893 2827 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC006026.1-201ENST00000444025 1803 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC131971.1-201ENST00000332881 1482 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 SNORA70.6-201ENST00000383934 134 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 Y_RNA.509-201ENST00000384506 99 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 RNU6-1009P-201ENST00000390996 107 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 RAB5CP1-201ENST00000395972 580 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 RN7SKP279-201ENST00000411383 298 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 GPS2P1-201ENST00000411761 986 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 CEACAMP8-201ENST00000413902 580 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 Z97055.1-201ENST00000419730 712 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC004448.2-201ENST00000422360 586 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AL445928.1-201ENST00000435545 222 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 RPS7P3-201ENST00000443360 580 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 NANOGNBP1-201ENST00000448444 480 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC098847.1-201ENST00000473094 348 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 TMED11P-201ENST00000479478 690 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 GAPDHP36-201ENST00000480688 918 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC092989.1-201ENST00000481235 277 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC023050.1-201ENST00000498198 304 ntBASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms