Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL356133.1-201ENST00000444762 372 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AP001992.1-205ENST00000462248 379 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 PPIAP21-201ENST00000464473 501 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RPL7P39-201ENST00000481157 744 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RPS4XP14-201ENST00000493072 781 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 NPM1P41-201ENST00000512920 831 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 LRRC34P2-201ENST00000514850 553 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RFPL4AP5-201ENST00000514977 504 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 IGKV2D-38-201ENST00000518423 240 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AF235103.2-201ENST00000525753 346 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC130366.1-201ENST00000526505 1192 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AP000907.2-201ENST00000530827 353 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC092470.1-201ENST00000546187 132 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 OR5BK1P-201ENST00000550421 823 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 HIF1AP1-201ENST00000553642 175 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 NQO1-205ENST00000561500 891 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 UBE2V2P2-201ENST00000587677 504 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 NRBF2P5-201ENST00000603087 788 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC025588.3-201ENST00000604182 274 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL590032.1-201ENST00000604920 252 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 Z84480.1-201ENST00000605131 311 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC093788.1-201ENST00000609356 927 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 MIR6774-201ENST00000614651 70 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC027506.1-201ENST00000621395 198 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AP006248.2-201ENST00000623309 592 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL354702.2-202ENST00000641481 890 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC105114.1-201ENST00000624795 1862 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL136531.3-201ENST00000624378 3658 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC097461.1-201ENST00000568928 2821 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC020658.2-201ENST00000559030 4020 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL596244.1-201ENST00000567068 3779 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL391262.1-201ENST00000556558 1992 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL592148.3-201ENST00000608771 2646 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 CTNNA1P1-201ENST00000515849 2728 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 ZNF806-201ENST00000438300 1774 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC241584.2-201ENST00000637142 2090 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 Y_RNA.11-201ENST00000362375 109 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 Y_RNA.61-201ENST00000362835 102 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 RNY4P16-201ENST00000364768 94 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 RNA5SP442-201ENST00000365050 107 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms