Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 SNORA57.1-201ENST00000391227 145 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 RPL23AP59-201ENST00000399415 461 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 VTA1P1-201ENST00000414044 866 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 SFR1P2-201ENST00000421841 730 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 NDUFB4P8-201ENST00000435351 367 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 RPL7P48-201ENST00000461513 746 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 TRAV31-201ENST00000502780 342 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 GTF2F2P1-201ENST00000511083 675 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 SEPT10P1-201ENST00000517342 1162 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 BGLT3-201ENST00000564523 994 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 MIR3160-1-201ENST00000577972 85 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC091042.1-201ENST00000579213 173 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AP000769.2-201ENST00000602344 396 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC091057.3-201ENST00000602684 733 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC009237.13-201ENST00000603193 276 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC010632.3-201ENST00000611377 369 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC008785.1-201ENST00000624475 456 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 ADAM5-202ENST00000399789 1942 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 SMG1P4-204ENST00000523028 4131 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 VN2R3P-201ENST00000422626 1412 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AL627171.1-201ENST00000618845 1308 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.97□□□□□ -1.61
COL28A1Q2UY09 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.96□□□□□ -1.61
COL28A1Q2UY09 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
COL28A1Q2UY09 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL28A1Q2UY09 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL28A1Q2UY09 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AP001642.1-201ENST00000624727 2117 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 PPIAP9-201ENST00000403866 498 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC096533.1-201ENST00000411645 353 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC013404.1-201ENST00000413068 249 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 OR6C64P-201ENST00000419708 825 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 TCEA1P2-201ENST00000420496 906 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 CHIAP3-201ENST00000423668 1133 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 FABP5P3-201ENST00000437960 408 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC112498.1-201ENST00000444401 332 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AL672138.1-201ENST00000450604 1015 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC104982.1-201ENST00000478775 574 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC140172.1-201ENST00000502928 141 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC083829.1-201ENST00000503756 657 ntBASIC4.96□□□□□ -1.62
COL28A1Q2UY09 AC111000.3-201ENST00000508057 576 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms