Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC2.56□□□□□ -2
HSPG2P98160 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC2.56□□□□□ -2
HSPG2P98160 YPEL5P3-201ENST00000547227 352 ntBASIC2.56□□□□□ -2
HSPG2P98160 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC2.56□□□□□ -2
HSPG2P98160 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC2.56□□□□□ -2
HSPG2P98160 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.56□□□□□ -2
HSPG2P98160 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC2.56□□□□□ -2
HSPG2P98160 AC007546.2-201ENST00000623996 360 ntBASIC2.56□□□□□ -2
HSPG2P98160 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC2.56□□□□□ -2
HSPG2P98160 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC2.56□□□□□ -2
HSPG2P98160 AP001642.1-201ENST00000624727 2117 ntBASIC2.55□□□□□ -2
HSPG2P98160 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.55□□□□□ -2
HSPG2P98160 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC2.55□□□□□ -2
HSPG2P98160 AC010486.1-201ENST00000511793 424 ntBASIC2.55□□□□□ -2
HSPG2P98160 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC2.55□□□□□ -2
HSPG2P98160 AC105031.1-201ENST00000518550 476 ntBASIC2.55□□□□□ -2
HSPG2P98160 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC2.55□□□□□ -2
HSPG2P98160 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 AL669831.5-218ENST00000591702 1873 ntBASIC2.55□□□□□ -2
HSPG2P98160 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 NLN-202ENST00000502464 8354 ntTSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC2.55□□□□□ -2
HSPG2P98160 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 SNORA74C-2-201ENST00000411179 201 ntBASIC2.55□□□□□ -2
HSPG2P98160 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 Z74696.2-201ENST00000436514 498 ntBASIC2.55□□□□□ -2
HSPG2P98160 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC2.55□□□□□ -2
HSPG2P98160 HIGD1AP18-201ENST00000520730 278 ntBASIC2.55□□□□□ -2
HSPG2P98160 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC2.55□□□□□ -2
HSPG2P98160 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 AC016957.2-201ENST00000616998 848 ntBASIC2.55□□□□□ -2
HSPG2P98160 AC243312.2-201ENST00000623340 601 ntBASIC2.55□□□□□ -2
HSPG2P98160 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC2.55□□□□□ -2
HSPG2P98160 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
HSPG2P98160 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 RN7SKP167-201ENST00000411047 285 ntBASIC2.55□□□□□ -2
HSPG2P98160 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.55□□□□□ -2
HSPG2P98160 APOA2-207ENST00000470459 416 ntTSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 Y_RNA.673-201ENST00000516306 88 ntBASIC2.55□□□□□ -2
HSPG2P98160 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.55□□□□□ -2
HSPG2P98160 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC2.55□□□□□ -2
HSPG2P98160 AC079587.1-201ENST00000603846 277 ntBASIC2.55□□□□□ -2
HSPG2P98160 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC2.55□□□□□ -2
HSPG2P98160 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HSPG2P98160 AC092111.2-201ENST00000611627 1414 ntBASIC2.54□□□□□ -2
HSPG2P98160 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC2.54□□□□□ -2
HSPG2P98160 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC2.54□□□□□ -2
HSPG2P98160 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 CBX1P3-201ENST00000413296 527 ntBASIC2.54□□□□□ -2
HSPG2P98160 AL158156.1-201ENST00000422509 473 ntBASIC2.54□□□□□ -2
HSPG2P98160 Z74021.1-201ENST00000423610 407 ntBASIC2.54□□□□□ -2
HSPG2P98160 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 MTCO1P45-201ENST00000431457 267 ntBASIC2.54□□□□□ -2
HSPG2P98160 AC092691.2-201ENST00000461787 803 ntBASIC2.54□□□□□ -2
HSPG2P98160 AC112206.1-201ENST00000468416 477 ntBASIC2.54□□□□□ -2
HSPG2P98160 AC106707.2-201ENST00000484182 374 ntBASIC2.54□□□□□ -2
HSPG2P98160 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC2.54□□□□□ -2
HSPG2P98160 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.54□□□□□ -2
HSPG2P98160 RANP9-201ENST00000519957 271 ntBASIC2.54□□□□□ -2
HSPG2P98160 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC2.54□□□□□ -2
HSPG2P98160 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC2.54□□□□□ -2
HSPG2P98160 AC006960.3-201ENST00000561845 705 ntBASIC2.54□□□□□ -2
HSPG2P98160 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC2.54□□□□□ -2
HSPG2P98160 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC2.54□□□□□ -2
HSPG2P98160 AC068790.5-201ENST00000602741 355 ntBASIC2.54□□□□□ -2
HSPG2P98160 AC005034.4-201ENST00000603612 899 ntBASIC2.54□□□□□ -2
HSPG2P98160 AL049634.3-201ENST00000604968 457 ntBASIC2.54□□□□□ -2
HSPG2P98160 AC073530.2-201ENST00000623987 261 ntBASIC2.54□□□□□ -2
HSPG2P98160 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC2.54□□□□□ -2
HSPG2P98160 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HSPG2P98160 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms