Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 FAM91A3P-201ENST00000456826 2544 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.17□□□□□ -1.58
BRCA1P38398 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.17□□□□□ -1.58
BRCA1P38398 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.17□□□□□ -1.58
BRCA1P38398 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.17□□□□□ -1.58
BRCA1P38398 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
BRCA1P38398 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
BRCA1P38398 MIR634-201ENST00000385208 97 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.17□□□□□ -1.58
BRCA1P38398 RPL38P1-201ENST00000460914 211 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 AC007688.1-201ENST00000475592 759 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
BRCA1P38398 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.17□□□□□ -1.58
BRCA1P38398 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.17□□□□□ -1.58
BRCA1P38398 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.17□□□□□ -1.58
BRCA1P38398 AC087477.6-201ENST00000559595 843 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.17□□□□□ -1.58
BRCA1P38398 AC008833.1-201ENST00000611633 691 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 AC007546.2-201ENST00000623996 360 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 AP001002.1-201ENST00000625148 1513 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 AC126323.6-202ENST00000568092 3511 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
BRCA1P38398 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.17□□□□□ -1.58
BRCA1P38398 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
BRCA1P38398 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.17□□□□□ -1.58
BRCA1P38398 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.17□□□□□ -1.58
BRCA1P38398 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
BRCA1P38398 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
BRCA1P38398 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC5.16□□□□□ -1.58
BRCA1P38398 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
BRCA1P38398 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.16□□□□□ -1.58
BRCA1P38398 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.16□□□□□ -1.58
BRCA1P38398 RPS11P1-201ENST00000451072 473 ntBASIC5.16□□□□□ -1.58
BRCA1P38398 AC090602.1-201ENST00000469695 252 ntBASIC5.16□□□□□ -1.58
BRCA1P38398 AC090686.1-201ENST00000481577 749 ntBASIC5.16□□□□□ -1.58
BRCA1P38398 RPS4XP15-201ENST00000489210 795 ntBASIC5.16□□□□□ -1.58
BRCA1P38398 CAB39P1-201ENST00000502277 460 ntBASIC5.16□□□□□ -1.58
BRCA1P38398 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.16□□□□□ -1.58
BRCA1P38398 AL592436.1-201ENST00000605135 558 ntBASIC5.16□□□□□ -1.58
BRCA1P38398 OR2BH1P-201ENST00000608850 864 ntBASIC5.16□□□□□ -1.58
BRCA1P38398 AC003985.2-201ENST00000562268 1669 ntBASIC5.16□□□□□ -1.58
BRCA1P38398 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
BRCA1P38398 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
BRCA1P38398 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
BRCA1P38398 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
BRCA1P38398 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
BRCA1P38398 ATP5F1P4-201ENST00000397288 746 ntBASIC5.15□□□□□ -1.58
BRCA1P38398 Z92545.1-201ENST00000411782 234 ntBASIC5.15□□□□□ -1.58
BRCA1P38398 AL159987.2-201ENST00000432754 307 ntBASIC5.15□□□□□ -1.58
BRCA1P38398 GAPDHP36-201ENST00000480688 918 ntBASIC5.15□□□□□ -1.58
BRCA1P38398 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.15□□□□□ -1.58
BRCA1P38398 RPL23AP97-201ENST00000568955 471 ntBASIC5.15□□□□□ -1.58
BRCA1P38398 AC110743.1-201ENST00000584870 478 ntBASIC5.15□□□□□ -1.58
BRCA1P38398 FP236240.3-201ENST00000623061 327 ntBASIC5.15□□□□□ -1.58
BRCA1P38398 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
BRCA1P38398 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
BRCA1P38398 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
BRCA1P38398 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
BRCA1P38398 ERCC6-202ENST00000374127 1782 ntBASIC5.15□□□□□ -1.58
BRCA1P38398 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
BRCA1P38398 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
BRCA1P38398 TET1P1-201ENST00000426627 2301 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
BRCA1P38398 NXPH1-205ENST00000602349 1953 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 OR4G1P-202ENST00000641173 1788 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.59
BRCA1P38398 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
BRCA1P38398 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.15□□□□□ -1.59
BRCA1P38398 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC5.15□□□□□ -1.59
BRCA1P38398 RPL7P4-203ENST00000430239 730 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.15□□□□□ -1.59
BRCA1P38398 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.15□□□□□ -1.59
BRCA1P38398 AC018635.1-201ENST00000468292 1030 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.15□□□□□ -1.59
BRCA1P38398 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.15□□□□□ -1.59
BRCA1P38398 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.15□□□□□ -1.59
BRCA1P38398 HSPE1P5-201ENST00000561489 272 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 AC096553.1-201ENST00000605169 829 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.15□□□□□ -1.59
BRCA1P38398 AL442067.2-201ENST00000614033 363 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 FRG1EP-201ENST00000634469 770 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
BRCA1P38398 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
BRCA1P38398 AC010266.2-201ENST00000564741 3255 ntBASIC5.15□□□□□ -1.59
BRCA1P38398 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
BRCA1P38398 AC068870.3-201ENST00000625077 2536 ntBASIC5.14□□□□□ -1.59
BRCA1P38398 CASC19-204ENST00000641001 2055 ntBASIC5.14□□□□□ -1.59
BRCA1P38398 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
BRCA1P38398 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.14□□□□□ -1.59
BRCA1P38398 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
BRCA1P38398 RPL21P17-201ENST00000397467 475 ntBASIC5.14□□□□□ -1.59
BRCA1P38398 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.14□□□□□ -1.59
BRCA1P38398 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.14□□□□□ -1.59
BRCA1P38398 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.14□□□□□ -1.59
BRCA1P38398 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.14□□□□□ -1.59
BRCA1P38398 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.14□□□□□ -1.59
BRCA1P38398 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.14□□□□□ -1.59
BRCA1P38398 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms