Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC015922.4-201ENST00000612568 690 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 MIR7154-201ENST00000620673 73 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.4□□□□□ -1.71
SHMT2P34897 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SHMT2P34897 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHMT2P34897 Z98755.1-201ENST00000407015 1384 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.39□□□□□ -1.71
SHMT2P34897 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.39□□□□□ -1.71
SHMT2P34897 AC068254.2-201ENST00000623938 3577 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.39□□□□□ -1.71
SHMT2P34897 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 AC027290.2-201ENST00000623210 18662 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.39□□□□□ -1.71
SHMT2P34897 MIR365B-201ENST00000362317 111 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 RNU4-23P-201ENST00000362839 140 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC4.39□□□□□ -1.71
SHMT2P34897 RPS24P12-201ENST00000402084 394 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.39□□□□□ -1.71
SHMT2P34897 AC244453.4-201ENST00000419150 388 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 RAD23BP1-201ENST00000421404 1227 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 RPL12P28-201ENST00000430852 489 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 MTND6P18-201ENST00000439477 513 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 RAB28P3-201ENST00000448325 597 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.39□□□□□ -1.71
SHMT2P34897 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 RN7SL41P-201ENST00000476144 297 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.39□□□□□ -1.71
SHMT2P34897 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.39□□□□□ -1.71
SHMT2P34897 AC022784.5-201ENST00000522241 437 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 AP000827.1-201ENST00000527814 258 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.39□□□□□ -1.71
SHMT2P34897 MIR5096-201ENST00000583713 70 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 MIR4715-201ENST00000584117 79 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 BPIFA4P-203ENST00000603168 689 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 AC008966.2-201ENST00000606157 453 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 MIR6748-201ENST00000610433 71 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 AL669942.2-201ENST00000620352 697 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
SHMT2P34897 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 LINC00622-201ENST00000562811 1570 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SHMT2P34897 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.39□□□□□ -1.71
SHMT2P34897 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SHMT2P34897 AL137100.1-201ENST00000556703 1620 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.39□□□□□ -1.71
SHMT2P34897 CPHL1P-201ENST00000461341 3407 ntBASIC4.39□□□□□ -1.71
SHMT2P34897 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SHMT2P34897 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SHMT2P34897 AL450326.2-201ENST00000421913 1962 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.38□□□□□ -1.71
SHMT2P34897 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SHMT2P34897 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SHMT2P34897 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SHMT2P34897 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.38□□□□□ -1.71
SHMT2P34897 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SHMT2P34897 RNU6-670P-201ENST00000364312 104 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AC009480.2-201ENST00000422916 432 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 RPEP3-201ENST00000425462 676 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.38□□□□□ -1.71
SHMT2P34897 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.38□□□□□ -1.71
SHMT2P34897 RPL31P53-201ENST00000457065 348 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 RN7SL459P-201ENST00000481078 302 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.38□□□□□ -1.71
SHMT2P34897 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.38□□□□□ -1.71
SHMT2P34897 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.38□□□□□ -1.71
SHMT2P34897 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.38□□□□□ -1.71
SHMT2P34897 AC100770.1-201ENST00000532310 322 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.38□□□□□ -1.71
SHMT2P34897 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.38□□□□□ -1.71
SHMT2P34897 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.38□□□□□ -1.71
SHMT2P34897 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.38□□□□□ -1.71
SHMT2P34897 AC068790.4-201ENST00000602474 263 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AC115286.1-201ENST00000604298 434 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 BNIP3P7-201ENST00000605641 516 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AL592494.3-201ENST00000609485 464 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AL353726.1-201ENST00000614041 1000 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AL590410.1-201ENST00000617925 333 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AC006065.6-201ENST00000625201 545 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 MIR7641-1-201ENST00000627518 61 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.38□□□□□ -1.71
SHMT2P34897 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
SHMT2P34897 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SHMT2P34897 RAD17P1-201ENST00000418130 2042 ntBASIC4.38□□□□□ -1.71
SHMT2P34897 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SHMT2P34897 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.37□□□□□ -1.71
SHMT2P34897 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.37□□□□□ -1.71
SHMT2P34897 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SHMT2P34897 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
SHMT2P34897 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
SHMT2P34897 RNU1-108P-201ENST00000362556 161 ntBASIC4.37□□□□□ -1.71
SHMT2P34897 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms