Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ELOCP20-201ENST00000422460 345 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 TRBV10-2-201ENST00000426318 395 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC115283.1-201ENST00000427353 400 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC236972.1-201ENST00000433225 199 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 RPL23AP89-201ENST00000439324 255 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 PRSS48-201ENST00000441586 560 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 RPS29P5-201ENST00000452777 171 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC009955.1-201ENST00000455896 271 ntTSL 5 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 RN7SL751P-201ENST00000473281 284 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 RN7SL861P-201ENST00000473793 285 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 RN7SL124P-201ENST00000498656 285 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC022447.4-201ENST00000504053 364 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 IL7-206ENST00000520269 456 ntTSL 3 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 HIGD1AP6-201ENST00000521833 279 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AP005597.2-201ENST00000526238 341 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AP003497.1-201ENST00000528472 562 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 ZNF841-203ENST00000594295 3819 ntAPPRIS P1 TSL 3 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 RPS11-203ENST00000596873 583 ntTSL 2 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 OR6R2P-201ENST00000609216 300 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 Metazoa_SRP.124-201ENST00000610352 345 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AL138726.1-201ENST00000614873 333 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 MIR6723-201ENST00000621981 89 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC079456.1-201ENST00000624010 480 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC009831.5-201ENST00000624000 3189 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 CDADC1-201ENST00000251108 3386 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
VPS9D1Q9Y2B5 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC7.52□□□□□ -1.2
VPS9D1Q9Y2B5 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 GNPAT-201ENST00000366647 2643 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 OR55B1P-203ENST00000641518 2602 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 MS4A2-204ENST00000617306 3512 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 CCT8P1-201ENST00000413611 1657 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 CASC23-201ENST00000534076 1563 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 Y_RNA.64-201ENST00000362845 102 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 RNU6-666P-201ENST00000363499 107 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 RNA5SP79-201ENST00000365193 109 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 Y_RNA.539-201ENST00000384635 107 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 IGKV6D-41-201ENST00000390271 371 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 Y_RNA.594-201ENST00000410373 140 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 RNU2-20P-201ENST00000410425 191 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 RNA5SP498-201ENST00000411342 120 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 E2F6P2-201ENST00000420708 748 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AL590729.1-201ENST00000427046 573 ntTSL 2 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC092106.2-201ENST00000436597 487 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC099799.1-201ENST00000439809 192 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC019185.1-201ENST00000442718 389 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 CYCSP24-201ENST00000445119 316 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AL139109.1-201ENST00000455491 297 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AL445687.2-201ENST00000458156 728 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 RN7SL414P-201ENST00000469545 294 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC104563.1-201ENST00000476147 376 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 RPS29P26-201ENST00000477483 171 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC023794.3-204ENST00000510754 236 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 TUBAP4-201ENST00000569261 416 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC087499.3-201ENST00000578210 717 ntTSL 2 BASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 MIR4775-201ENST00000581168 75 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 LAPTM4BP2-201ENST00000604542 446 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC073657.2-201ENST00000605661 303 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AL121992.2-201ENST00000606262 256 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC012488.1-201ENST00000611221 640 ntBASIC7.52□□□□□ -1.21
VPS9D1Q9Y2B5 AC091925.2-201ENST00000625059 256 ntBASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms