Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC114786.1-201ENST00000512892 1415 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC017079.1-201ENST00000333650 415 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 RNA5SP131-201ENST00000365452 119 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 RNU1-106P-201ENST00000384382 164 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 MIR92A2-201ENST00000385299 75 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AP002784.2-201ENST00000397300 549 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 DBIP1-201ENST00000401435 260 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 RPS27AP11-201ENST00000402798 447 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 RPL21P67-201ENST00000402896 478 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 HMGB3P18-201ENST00000406327 590 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 RNA5SP498-201ENST00000411342 120 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 UBE2V1P11-201ENST00000411559 285 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 LINC01347-201ENST00000417964 355 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC090018.1-201ENST00000434369 367 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 RPL34P26-201ENST00000445636 354 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AL450023.1-201ENST00000450868 751 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 IFNWP4-201ENST00000453148 294 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC104982.1-201ENST00000478775 574 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 RPS27AP16-201ENST00000492222 470 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 TPT1P3-201ENST00000492841 512 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC005912.1-201ENST00000495392 255 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 RNU6-1004P-201ENST00000516584 111 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 MRPS16P1-201ENST00000523462 412 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC106734.1-201ENST00000568646 663 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC234771.5-201ENST00000600161 514 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC005084.1-201ENST00000605160 304 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC244107.2-201ENST00000611773 76 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC109583.2-201ENST00000617367 129 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AP002505.2-201ENST00000623585 696 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AL353662.3-201ENST00000625131 237 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 AC126544.2-201ENST00000625174 749 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 IQCB2P-201ENST00000401788 1633 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 CCT8P1-201ENST00000413611 1657 ntBASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.38□□□□□ -1.71
PDLIM3Q53GG5 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 AP000568.1-201ENST00000282964 442 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 SNORD56.4-201ENST00000363883 71 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 RNA5SP234-201ENST00000363916 119 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 AC007618.1-201ENST00000366455 732 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 AC096533.1-201ENST00000411645 353 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 AC093162.1-201ENST00000419682 124 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 SEC63P1-201ENST00000425785 1258 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 AC104837.2-201ENST00000427236 424 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 CYCSP6-201ENST00000434498 302 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 FABP5P3-201ENST00000437960 408 ntBASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
PDLIM3Q53GG5 AL096803.2-201ENST00000450032 677 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms