Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC026403.1-201ENST00000518938 295 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC018816.2-201ENST00000621460 353 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC015871.5-202ENST00000623252 701 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC097461.1-201ENST00000568928 2821 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 FCF1P5-201ENST00000406490 482 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AL050321.1-201ENST00000432363 400 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 RPL7P49-201ENST00000471402 708 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 RPL23AP37-201ENST00000479658 549 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 RNA5SP519-201ENST00000516480 119 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 MIR3936-201ENST00000584304 110 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 MIR8069-1-201ENST00000616627 86 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 MIR8069-2-201ENST00000621412 86 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC008013.2-202ENST00000637965 364 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AL133243.3-201ENST00000617415 3004 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC099654.3-201ENST00000447087 1546 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AP001642.1-201ENST00000624727 2117 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 RN7SKP186-201ENST00000365371 303 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 MIR449B-201ENST00000384995 97 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC108032.1-201ENST00000416706 207 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC114814.2-201ENST00000419195 485 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 DUXAP2-201ENST00000519198 589 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC012468.1-201ENST00000604888 430 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC007179.3-201ENST00000604976 235 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AC010201.1-201ENST00000605051 540 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 AP002360.3-201ENST00000607673 710 ntBASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CCDC88AQ3V6T2 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 RNU1-14P-201ENST00000362759 152 ntBASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 AL359643.1-201ENST00000404109 423 ntBASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 AC091390.3-201ENST00000426478 338 ntBASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 HMGN2P31-201ENST00000432430 273 ntBASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 COX6CP4-201ENST00000605798 228 ntBASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 AC007546.1-201ENST00000619452 559 ntBASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 AC012314.7-201ENST00000619693 93 ntBASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC88AQ3V6T2 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 AP000357.1-201ENST00000409926 1165 ntBASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 RN7SKP167-201ENST00000411047 285 ntBASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 OR5D2P-201ENST00000524390 911 ntBASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 MIR3944-201ENST00000581277 108 ntBASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 AC068870.3-201ENST00000625077 2536 ntBASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.3□□□□□ -1.56
CCDC88AQ3V6T2 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms