Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC5.18□□□□□ -1.58
USP41Q3LFD5 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP41Q3LFD5 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP41Q3LFD5 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP41Q3LFD5 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 Z98755.1-201ENST00000407015 1384 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP41Q3LFD5 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
USP41Q3LFD5 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
USP41Q3LFD5 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP41Q3LFD5 OR4K15-201ENST00000305051 1216 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AL590240.1-201ENST00000334118 313 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 RNU6-252P-201ENST00000363232 107 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 HMGB1P10-201ENST00000395823 563 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 RNU2-17P-201ENST00000410290 190 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 RN7SKP106-201ENST00000410832 272 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 COX6CP17-201ENST00000421389 185 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 HSFY1P1-201ENST00000423928 1178 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC016712.1-201ENST00000431088 378 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC107398.1-201ENST00000486904 505 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC104971.1-201ENST00000495117 578 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 PPM1AP1-201ENST00000502740 1135 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC111000.3-201ENST00000508057 576 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC121161.1-201ENST00000510606 652 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 MTATP6P9-201ENST00000515039 680 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC138938.1-201ENST00000515431 782 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 RN7SKP157-201ENST00000516174 282 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC133555.2-201ENST00000550213 292 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC006349.1-201ENST00000555526 235 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 MIR4697-201ENST00000582977 78 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AL391001.1-201ENST00000602747 715 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC104687.2-201ENST00000604442 342 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC012557.1-201ENST00000607115 611 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC112503.2-201ENST00000609005 552 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC015871.5-202ENST00000623252 701 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC008758.3-201ENST00000507003 1829 ntBASIC5.17□□□□□ -1.58
USP41Q3LFD5 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP41Q3LFD5 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP41Q3LFD5 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USP41Q3LFD5 A2MP1-204ENST00000566278 4130 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
USP41Q3LFD5 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP41Q3LFD5 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USP41Q3LFD5 DHX40P1-201ENST00000588725 1412 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP41Q3LFD5 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
USP41Q3LFD5 SPATA2P1-201ENST00000431223 2055 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP41Q3LFD5 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USP41Q3LFD5 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.16□□□□□ -1.58
USP41Q3LFD5 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
USP41Q3LFD5 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.16□□□□□ -1.58
USP41Q3LFD5 SNORA62-201ENST00000365493 153 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP41Q3LFD5 AC104297.1-201ENST00000393779 870 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP41Q3LFD5 XKRYP4-201ENST00000414395 483 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.16□□□□□ -1.58
USP41Q3LFD5 SEC63P1-201ENST00000425785 1258 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 C4BPAP2-201ENST00000428434 478 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.16□□□□□ -1.58
USP41Q3LFD5 AL645931.1-201ENST00000439737 410 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 BTF3P6-201ENST00000448054 499 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 XKRYP5-201ENST00000449659 483 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 HMGB1P5-202ENST00000451497 985 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.16□□□□□ -1.58
USP41Q3LFD5 AL591473.1-201ENST00000464297 313 ntBASIC5.16□□□□□ -1.58
USP41Q3LFD5 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.16□□□□□ -1.58
USP41Q3LFD5 HPRT1P1-201ENST00000509498 657 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms