Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.27□□□□□ -1.73
LIM2P55344 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.27□□□□□ -1.73
LIM2P55344 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.27□□□□□ -1.73
LIM2P55344 RN7SL52P-201ENST00000584271 284 ntBASIC4.27□□□□□ -1.73
LIM2P55344 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.27□□□□□ -1.73
LIM2P55344 BPIFA4P-203ENST00000603168 689 ntBASIC4.27□□□□□ -1.73
LIM2P55344 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.27□□□□□ -1.73
LIM2P55344 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.27□□□□□ -1.73
LIM2P55344 AL353600.1-201ENST00000608148 251 ntBASIC4.27□□□□□ -1.73
LIM2P55344 AC107308.1-201ENST00000615897 301 ntBASIC4.27□□□□□ -1.73
LIM2P55344 AC074276.2-201ENST00000619891 348 ntBASIC4.27□□□□□ -1.73
LIM2P55344 RPL23AP61-201ENST00000623642 466 ntBASIC4.27□□□□□ -1.73
LIM2P55344 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.27□□□□□ -1.73
LIM2P55344 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.27□□□□□ -1.73
LIM2P55344 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.27□□□□□ -1.73
LIM2P55344 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
LIM2P55344 AL592148.3-201ENST00000608771 2646 ntBASIC4.27□□□□□ -1.73
LIM2P55344 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIM2P55344 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
LIM2P55344 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.27□□□□□ -1.73
LIM2P55344 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
LIM2P55344 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIM2P55344 AC139769.1-204ENST00000472297 1931 ntBASIC4.27□□□□□ -1.73
LIM2P55344 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIM2P55344 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIM2P55344 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
LIM2P55344 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.26□□□□□ -1.73
LIM2P55344 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
LIM2P55344 TTC39DP-201ENST00000416781 1688 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AL132640.2-201ENST00000559968 1698 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC027228.2-201ENST00000567141 2154 ntBASIC4.26□□□□□ -1.73
LIM2P55344 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.26□□□□□ -1.73
LIM2P55344 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
LIM2P55344 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 SNORA11B-201ENST00000408175 129 ntBASIC4.26□□□□□ -1.73
LIM2P55344 SETP15-201ENST00000412724 337 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.26□□□□□ -1.73
LIM2P55344 RPEP3-201ENST00000425462 676 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.26□□□□□ -1.73
LIM2P55344 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.26□□□□□ -1.73
LIM2P55344 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC4.26□□□□□ -1.73
LIM2P55344 RPL23AP43-201ENST00000446445 471 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.26□□□□□ -1.73
LIM2P55344 AC012671.1-201ENST00000451912 203 ntBASIC4.26□□□□□ -1.73
LIM2P55344 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.26□□□□□ -1.73
LIM2P55344 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.26□□□□□ -1.73
LIM2P55344 RPS29P33-201ENST00000456717 146 ntBASIC4.26□□□□□ -1.73
LIM2P55344 OR52A4P-202ENST00000481634 799 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC093720.1-201ENST00000505681 714 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC111000.3-201ENST00000508057 576 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC034244.2-201ENST00000514668 858 ntBASIC4.26□□□□□ -1.73
LIM2P55344 RN7SKP92-201ENST00000517266 244 ntBASIC4.26□□□□□ -1.73
LIM2P55344 CDH12P4-201ENST00000517835 295 ntBASIC4.26□□□□□ -1.73
LIM2P55344 CDH12P3-201ENST00000517935 295 ntBASIC4.26□□□□□ -1.73
LIM2P55344 CDH12P1-201ENST00000518435 295 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AP000827.1-201ENST00000527814 258 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.26□□□□□ -1.73
LIM2P55344 AC018552.1-201ENST00000562099 811 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC084783.1-201ENST00000565846 910 ntBASIC4.26□□□□□ -1.73
LIM2P55344 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.26□□□□□ -1.73
LIM2P55344 AC090181.2-201ENST00000602975 672 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC008782.1-201ENST00000603386 430 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC103792.1-201ENST00000603591 919 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.26□□□□□ -1.73
LIM2P55344 AC239803.2-201ENST00000610161 430 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AL353726.1-201ENST00000614041 1000 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC104307.1-201ENST00000616142 196 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AC091905.2-201ENST00000623143 306 ntBASIC4.26□□□□□ -1.73
LIM2P55344 AL118508.4-201ENST00000624142 1176 ntBASIC4.26□□□□□ -1.73
LIM2P55344 OR2L1P-202ENST00000641567 1023 ntBASIC4.26□□□□□ -1.73
LIM2P55344 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 AC017104.4-201ENST00000636283 1592 ntBASIC4.26□□□□□ -1.73
LIM2P55344 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.26□□□□□ -1.73
LIM2P55344 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIM2P55344 Z98755.1-201ENST00000407015 1384 ntBASIC4.26□□□□□ -1.73
LIM2P55344 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LIM2P55344 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIM2P55344 NXPH1-205ENST00000602349 1953 ntBASIC4.25□□□□□ -1.73
LIM2P55344 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.25□□□□□ -1.73
LIM2P55344 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LIM2P55344 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIM2P55344 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
LIM2P55344 RNU4-39P-201ENST00000362455 127 ntBASIC4.25□□□□□ -1.73
LIM2P55344 SNORA27.3-201ENST00000364937 134 ntBASIC4.25□□□□□ -1.73
LIM2P55344 MT-TP-201ENST00000387461 68 ntBASIC4.25□□□□□ -1.73
LIM2P55344 RNA5SP332-201ENST00000391063 115 ntBASIC4.25□□□□□ -1.73
LIM2P55344 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIM2P55344 GSTA12P-201ENST00000402398 508 ntBASIC4.25□□□□□ -1.73
LIM2P55344 RPL21P108-201ENST00000413857 481 ntBASIC4.25□□□□□ -1.73
LIM2P55344 OR51A6P-201ENST00000418680 1004 ntBASIC4.25□□□□□ -1.73
LIM2P55344 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms