Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC020978.9-201ENST00000624380 1141 ntBASIC6.08□□□□□ -1.44
MSH6P52701 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH6P52701 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSH6P52701 AL445487.1-201ENST00000415694 1580 ntBASIC6.08□□□□□ -1.44
MSH6P52701 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSH6P52701 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSH6P52701 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
MSH6P52701 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSH6P52701 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSH6P52701 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC6.08□□□□□ -1.44
MSH6P52701 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSH6P52701 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSH6P52701 KRR1P1-201ENST00000419430 803 ntBASIC6.07□□□□□ -1.44
MSH6P52701 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC6.07□□□□□ -1.44
MSH6P52701 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC6.07□□□□□ -1.44
MSH6P52701 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC6.07□□□□□ -1.44
MSH6P52701 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC6.07□□□□□ -1.44
MSH6P52701 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC6.07□□□□□ -1.44
MSH6P52701 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC6.07□□□□□ -1.44
MSH6P52701 MIR3200-201ENST00000580767 85 ntBASIC6.07□□□□□ -1.44
MSH6P52701 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC6.07□□□□□ -1.44
MSH6P52701 AC096577.2-201ENST00000611455 153 ntBASIC6.07□□□□□ -1.44
MSH6P52701 AL445363.3-201ENST00000623080 671 ntBASIC6.07□□□□□ -1.44
MSH6P52701 AC005858.4-201ENST00000623191 700 ntBASIC6.07□□□□□ -1.44
MSH6P52701 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC6.07□□□□□ -1.44
MSH6P52701 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC6.07□□□□□ -1.44
MSH6P52701 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
MSH6P52701 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC6.07□□□□□ -1.44
MSH6P52701 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSH6P52701 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.07□□□□□ -1.44
MSH6P52701 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC6.07□□□□□ -1.44
MSH6P52701 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
MSH6P52701 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSH6P52701 AL672167.1-204ENST00000641875 3017 ntBASIC6.07□□□□□ -1.44
MSH6P52701 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSH6P52701 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
MSH6P52701 SNORA73.2-201ENST00000364946 201 ntBASIC6.06□□□□□ -1.44
MSH6P52701 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSH6P52701 RN7SKP235-201ENST00000410662 305 ntBASIC6.06□□□□□ -1.44
MSH6P52701 AL157831.1-201ENST00000426134 473 ntBASIC6.06□□□□□ -1.44
MSH6P52701 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH6P52701 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC6.06□□□□□ -1.44
MSH6P52701 AC010374.1-201ENST00000503762 1237 ntBASIC6.06□□□□□ -1.44
MSH6P52701 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
MSH6P52701 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC6.06□□□□□ -1.44
MSH6P52701 KCTD9P2-201ENST00000512203 1013 ntBASIC6.06□□□□□ -1.44
MSH6P52701 PAICSP4-201ENST00000517543 1253 ntBASIC6.06□□□□□ -1.44
MSH6P52701 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC6.06□□□□□ -1.44
MSH6P52701 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH6P52701 AL121772.2-201ENST00000614331 297 ntBASIC6.06□□□□□ -1.44
MSH6P52701 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSH6P52701 AL731532.2-201ENST00000623542 1953 ntBASIC6.06□□□□□ -1.44
MSH6P52701 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
MSH6P52701 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.06□□□□□ -1.44
MSH6P52701 AC233968.1-201ENST00000611212 1300 ntBASIC6.06□□□□□ -1.44
MSH6P52701 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
MSH6P52701 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
MSH6P52701 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
MSH6P52701 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
MSH6P52701 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
MSH6P52701 AL590704.1-201ENST00000402856 794 ntBASIC6.06□□□□□ -1.44
MSH6P52701 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC6.06□□□□□ -1.44
MSH6P52701 RNA5SP36-201ENST00000410197 133 ntBASIC6.06□□□□□ -1.44
MSH6P52701 AL121878.1-201ENST00000418638 859 ntBASIC6.06□□□□□ -1.44
MSH6P52701 AC117434.1-201ENST00000419971 836 ntBASIC6.06□□□□□ -1.44
MSH6P52701 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC6.06□□□□□ -1.44
MSH6P52701 AL512326.1-201ENST00000443050 721 ntBASIC6.06□□□□□ -1.44
MSH6P52701 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH6P52701 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSH6P52701 RN7SL812P-201ENST00000493791 279 ntBASIC6.06□□□□□ -1.44
MSH6P52701 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
MSH6P52701 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC6.06□□□□□ -1.44
MSH6P52701 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC6.06□□□□□ -1.44
MSH6P52701 RNA5SP497-201ENST00000516081 97 ntBASIC6.06□□□□□ -1.44
MSH6P52701 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6.06□□□□□ -1.44
MSH6P52701 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC6.06□□□□□ -1.44
MSH6P52701 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC6.06□□□□□ -1.44
MSH6P52701 VN1R92P-201ENST00000598511 928 ntBASIC6.06□□□□□ -1.44
MSH6P52701 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH6P52701 AL606490.9-201ENST00000603331 271 ntBASIC6.06□□□□□ -1.44
MSH6P52701 AC063952.1-203ENST00000634410 658 ntBASIC6.06□□□□□ -1.44
MSH6P52701 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH6P52701 VPS35P1-201ENST00000563400 1518 ntBASIC6.05□□□□□ -1.44
MSH6P52701 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC6.05□□□□□ -1.44
MSH6P52701 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH6P52701 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSH6P52701 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH6P52701 GHR-202ENST00000357703 4316 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH6P52701 GHR-213ENST00000622294 4312 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH6P52701 TET1P1-201ENST00000426627 2301 ntBASIC6.05□□□□□ -1.44
MSH6P52701 GLS-204ENST00000409428 816 ntTSL 2 BASIC6.05□□□□□ -1.44
MSH6P52701 RN7SKP182-201ENST00000410772 298 ntBASIC6.05□□□□□ -1.44
MSH6P52701 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC6.05□□□□□ -1.44
MSH6P52701 CYCSP10-201ENST00000417973 294 ntBASIC6.05□□□□□ -1.44
MSH6P52701 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSH6P52701 EIF4HP2-201ENST00000424380 563 ntBASIC6.05□□□□□ -1.44
MSH6P52701 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC6.05□□□□□ -1.44
MSH6P52701 ALG13-211ENST00000473389 693 ntTSL 2 BASIC6.05□□□□□ -1.44
MSH6P52701 AC090686.1-201ENST00000481577 749 ntBASIC6.05□□□□□ -1.44
MSH6P52701 AC026782.2-201ENST00000510845 636 ntBASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms