Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
BRCA1P38398 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
BRCA1P38398 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
BRCA1P38398 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
BRCA1P38398 AC022417.1-201ENST00000624768 1303 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 RNU1-20P-201ENST00000363314 162 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 VTI1BP4-201ENST00000427516 527 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.2□□□□□ -1.58
BRCA1P38398 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.2□□□□□ -1.58
BRCA1P38398 AC008155.2-201ENST00000464337 397 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.2□□□□□ -1.58
BRCA1P38398 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.2□□□□□ -1.58
BRCA1P38398 AL359219.2-201ENST00000555184 348 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 AC005412.1-201ENST00000580812 1049 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.2□□□□□ -1.58
BRCA1P38398 AL159169.3-201ENST00000608871 561 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.2□□□□□ -1.58
BRCA1P38398 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.2□□□□□ -1.58
BRCA1P38398 U6.105-201ENST00000637379 88 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.19□□□□□ -1.58
BRCA1P38398 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
BRCA1P38398 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.19□□□□□ -1.58
BRCA1P38398 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
BRCA1P38398 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
BRCA1P38398 AC093591.2-201ENST00000565254 3843 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 AC006042.3-201ENST00000454684 1469 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 AC024560.2-201ENST00000507981 1497 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.19□□□□□ -1.58
BRCA1P38398 AC104333.2-201ENST00000422630 192 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 BTF3P6-201ENST00000448054 499 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 AC115115.1-201ENST00000449927 248 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 RPL23AP81-201ENST00000455252 467 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 RPL36AP13-201ENST00000457490 317 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.19□□□□□ -1.58
BRCA1P38398 AC026427.2-201ENST00000506228 536 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 RNA5SP446-201ENST00000515955 82 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.19□□□□□ -1.58
BRCA1P38398 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.19□□□□□ -1.58
BRCA1P38398 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.19□□□□□ -1.58
BRCA1P38398 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.19□□□□□ -1.58
BRCA1P38398 AC005858.4-201ENST00000623191 700 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 AC063952.1-203ENST00000634410 658 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.19□□□□□ -1.58
BRCA1P38398 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.19□□□□□ -1.58
BRCA1P38398 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
BRCA1P38398 USP9YP4-201ENST00000424401 1745 ntBASIC5.19□□□□□ -1.58
BRCA1P38398 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
BRCA1P38398 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
BRCA1P38398 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
BRCA1P38398 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.18□□□□□ -1.58
BRCA1P38398 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 RNU4-6P-201ENST00000410804 122 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 HSPE1P12-201ENST00000412576 301 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 RPS4XP4-201ENST00000443195 763 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 AC110792.1-201ENST00000491826 472 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC5.18□□□□□ -1.58
BRCA1P38398 RNU6-964P-201ENST00000516524 69 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.18□□□□□ -1.58
BRCA1P38398 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.18□□□□□ -1.58
BRCA1P38398 AC037471.2-201ENST00000564941 598 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 AC090312.1-201ENST00000580637 348 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.18□□□□□ -1.58
BRCA1P38398 AL049634.3-201ENST00000604968 457 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 AL354798.1-201ENST00000622505 329 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 AC016542.2-201ENST00000624201 619 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 AC073346.2-201ENST00000624724 2058 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.18□□□□□ -1.58
BRCA1P38398 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.18□□□□□ -1.58
BRCA1P38398 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.18□□□□□ -1.58
BRCA1P38398 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
BRCA1P38398 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 AL359922.3-201ENST00000624779 1670 ntBASIC5.18□□□□□ -1.58
BRCA1P38398 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC5.18□□□□□ -1.58
BRCA1P38398 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
BRCA1P38398 MIR200C-201ENST00000384980 68 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.17□□□□□ -1.58
BRCA1P38398 NACAP7-201ENST00000407371 609 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC5.17□□□□□ -1.58
BRCA1P38398 AC104306.1-201ENST00000449702 371 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.17□□□□□ -1.58
BRCA1P38398 RPL35AP15-201ENST00000468042 339 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.17□□□□□ -1.58
BRCA1P38398 ATP1B1P1-201ENST00000509767 915 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 AC074250.1-201ENST00000511117 192 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.17□□□□□ -1.58
BRCA1P38398 Z98200.1-201ENST00000607298 470 ntBASIC5.17□□□□□ -1.58
BRCA1P38398 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.17□□□□□ -1.58
BRCA1P38398 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms