Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PPIAP32-201ENST00000449940 472 ntBASIC6.53□□□□□ -1.36
MSX1P28360 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 AC239798.3-201ENST00000454459 408 ntBASIC6.53□□□□□ -1.36
MSX1P28360 AC012181.1-201ENST00000479895 423 ntBASIC6.53□□□□□ -1.36
MSX1P28360 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX1P28360 SCARNA11.1-201ENST00000516918 132 ntBASIC6.53□□□□□ -1.36
MSX1P28360 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX1P28360 AP003084.1-201ENST00000524828 742 ntBASIC6.53□□□□□ -1.36
MSX1P28360 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX1P28360 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX1P28360 SNORD39.2-201ENST00000579995 76 ntBASIC6.53□□□□□ -1.36
MSX1P28360 IGLJCOR18-201ENST00000584002 424 ntBASIC6.53□□□□□ -1.36
MSX1P28360 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 AL157899.1-201ENST00000604110 936 ntBASIC6.53□□□□□ -1.36
MSX1P28360 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
MSX1P28360 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
MSX1P28360 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX1P28360 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX1P28360 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX1P28360 OFD1P9Y-201ENST00000417699 1491 ntBASIC6.53□□□□□ -1.36
MSX1P28360 MTND4P1-201ENST00000457501 1466 ntBASIC6.53□□□□□ -1.36
MSX1P28360 AC012618.3-205ENST00000637896 1496 ntBASIC6.53□□□□□ -1.36
MSX1P28360 RMST-210ENST00000640149 2844 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC6.52□□□□□ -1.36
MSX1P28360 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC6.52□□□□□ -1.37
MSX1P28360 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.52□□□□□ -1.37
MSX1P28360 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
MSX1P28360 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC6.52□□□□□ -1.37
MSX1P28360 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
MSX1P28360 Y_RNA.100-201ENST00000363141 102 ntBASIC6.52□□□□□ -1.37
MSX1P28360 RNA5SP472-201ENST00000363868 119 ntBASIC6.52□□□□□ -1.37
MSX1P28360 Y_RNA.188-201ENST00000363952 111 ntBASIC6.52□□□□□ -1.37
MSX1P28360 AC117470.1-201ENST00000381974 330 ntBASIC6.52□□□□□ -1.37
MSX1P28360 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC6.52□□□□□ -1.37
MSX1P28360 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.52□□□□□ -1.37
MSX1P28360 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC6.52□□□□□ -1.37
MSX1P28360 USP24P1-201ENST00000433802 779 ntBASIC6.52□□□□□ -1.37
MSX1P28360 GPR143P-201ENST00000434155 205 ntBASIC6.52□□□□□ -1.37
MSX1P28360 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
MSX1P28360 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX1P28360 BTF3P15-201ENST00000455606 336 ntBASIC6.52□□□□□ -1.37
MSX1P28360 RN7SL283P-201ENST00000489055 303 ntBASIC6.52□□□□□ -1.37
MSX1P28360 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX1P28360 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC6.52□□□□□ -1.37
MSX1P28360 TTC39CP1-201ENST00000512513 755 ntBASIC6.52□□□□□ -1.37
MSX1P28360 RNA5SP518-201ENST00000515957 119 ntBASIC6.52□□□□□ -1.37
MSX1P28360 RNU6-1137P-201ENST00000517073 99 ntBASIC6.52□□□□□ -1.37
MSX1P28360 IGHVII-51-2-201ENST00000519778 259 ntBASIC6.52□□□□□ -1.37
MSX1P28360 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX1P28360 PCNAP4-201ENST00000532690 730 ntBASIC6.52□□□□□ -1.37
MSX1P28360 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC6.52□□□□□ -1.37
MSX1P28360 AL845552.1-201ENST00000556820 323 ntBASIC6.52□□□□□ -1.37
MSX1P28360 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC6.52□□□□□ -1.37
MSX1P28360 AL078601.3-201ENST00000573303 535 ntBASIC6.52□□□□□ -1.37
MSX1P28360 AP000654.2-201ENST00000605633 586 ntBASIC6.52□□□□□ -1.37
MSX1P28360 AL136097.3-201ENST00000611097 505 ntBASIC6.52□□□□□ -1.37
MSX1P28360 AC005899.7-201ENST00000618199 588 ntBASIC6.52□□□□□ -1.37
MSX1P28360 PFKM-232ENST00000629846 381 ntTSL 4 BASIC6.52□□□□□ -1.37
MSX1P28360 AC135068.11-201ENST00000636378 921 ntBASIC6.52□□□□□ -1.37
MSX1P28360 AC135068.12-201ENST00000637370 931 ntBASIC6.52□□□□□ -1.37
MSX1P28360 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC6.52□□□□□ -1.37
MSX1P28360 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 AL359263.1-201ENST00000441188 2796 ntBASIC6.52□□□□□ -1.37
MSX1P28360 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
MSX1P28360 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC6.52□□□□□ -1.37
MSX1P28360 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
MSX1P28360 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC6.52□□□□□ -1.37
MSX1P28360 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms