Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
HMGB1P09429 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.4□□□□□ -1.39
HMGB1P09429 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.39
HMGB1P09429 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC6.4□□□□□ -1.39
HMGB1P09429 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC6.39□□□□□ -1.39
HMGB1P09429 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HMGB1P09429 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC6.39□□□□□ -1.39
HMGB1P09429 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HMGB1P09429 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HMGB1P09429 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HMGB1P09429 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC6.39□□□□□ -1.39
HMGB1P09429 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
HMGB1P09429 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HMGB1P09429 TMSB4XP4-201ENST00000323496 618 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 RNU1-19P-201ENST00000363306 165 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 RN7SKP15-201ENST00000364742 309 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 RNA5SP241-201ENST00000391326 114 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.39□□□□□ -1.39
HMGB1P09429 RNA5SP487-201ENST00000410186 122 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC6.39□□□□□ -1.39
HMGB1P09429 SFR1P2-201ENST00000421841 730 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC6.39□□□□□ -1.39
HMGB1P09429 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 ARF4P4-201ENST00000439608 520 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 GAPDHP25-201ENST00000447061 1001 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 YWHAEP1-201ENST00000453697 763 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 HMGN3P1-201ENST00000453847 193 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
HMGB1P09429 RN7SL51P-201ENST00000468230 285 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 EIF1P7-201ENST00000487533 337 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.39□□□□□ -1.39
HMGB1P09429 AC083829.1-201ENST00000503756 657 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.39□□□□□ -1.39
HMGB1P09429 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 RPL7L1P4-201ENST00000513004 707 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.39□□□□□ -1.39
HMGB1P09429 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.39□□□□□ -1.39
HMGB1P09429 AC022404.1-201ENST00000555320 273 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.39□□□□□ -1.39
HMGB1P09429 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC6.39□□□□□ -1.39
HMGB1P09429 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.39□□□□□ -1.39
HMGB1P09429 AC007566.2-201ENST00000603642 413 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 AC105227.2-201ENST00000615075 605 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 AC126175.1-201ENST00000617041 758 ntBASIC6.39□□□□□ -1.39
HMGB1P09429 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.39□□□□□ -1.39
HMGB1P09429 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
HMGB1P09429 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HMGB1P09429 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6.39□□□□□ -1.39
HMGB1P09429 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HMGB1P09429 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.39□□□□□ -1.39
HMGB1P09429 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HMGB1P09429 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.38□□□□□ -1.39
HMGB1P09429 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 RN7SKP44-201ENST00000363602 316 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 RN7SKP124-201ENST00000364730 341 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AC096533.1-201ENST00000411645 353 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 LIPT1P1-201ENST00000415870 1186 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.38□□□□□ -1.39
HMGB1P09429 AC124944.2-201ENST00000429866 1242 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AC079807.1-201ENST00000429993 481 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 GSTM5P1-201ENST00000434751 660 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AL390119.1-201ENST00000440329 312 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC6.38□□□□□ -1.39
HMGB1P09429 AC090804.1-201ENST00000448870 490 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 RHEBP2-201ENST00000450289 600 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 Z99714.1-201ENST00000450463 807 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AC144530.1-201ENST00000452862 555 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC6.38□□□□□ -1.39
HMGB1P09429 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC6.38□□□□□ -1.39
HMGB1P09429 HMGB1P38-201ENST00000490557 577 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AC022133.1-201ENST00000490961 571 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC6.38□□□□□ -1.39
HMGB1P09429 AC098976.1-201ENST00000513014 541 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.38□□□□□ -1.39
HMGB1P09429 AP003102.1-201ENST00000525638 661 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC6.38□□□□□ -1.39
HMGB1P09429 AC090888.3-201ENST00000558917 509 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 ZNF971P-201ENST00000562068 1249 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 MIR3614-201ENST00000581261 86 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC6.38□□□□□ -1.39
HMGB1P09429 AC104695.2-201ENST00000605056 775 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6.38□□□□□ -1.39
HMGB1P09429 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.38□□□□□ -1.39
HMGB1P09429 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.38□□□□□ -1.39
HMGB1P09429 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC6.38□□□□□ -1.39
HMGB1P09429 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 AC111188.2-201ENST00000529697 1387 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 AP001029.2-203ENST00000589795 4910 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms